Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_G06
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.7  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 452 TSSAYIDLPPYTPTAHLRXWGGVVTTFL 535
           TS     LPP + T  +  W GV  TF+
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 452 TSSAYIDLPPYTPTAHLRXWGGVVTTFL 535
           TS     LPP + T  +  W GV  TF+
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTFV 315


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 187 EPNEEIIFHETSRPTVLEEFRTGT 258
           EP   I+      PTVLEE   GT
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGT 654


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 187 EPNEEIIFHETSRPTVLEEFRTGT 258
           EP   I+      PTVLEE   GT
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGT 654


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 187 EPNEEIIFHETSRPTVLEEFRTGT 258
           EP   I+      PTVLEE   GT
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGT 654


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 596 SLHPXDVNGSLFW 558
           S+ P D NGS++W
Sbjct: 28  SIKPKDHNGSIYW 40


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 503 RXWGGVVTTFLESPVDFGAKTNSH*RXWGGDLEIPVSQTAIH 628
           + WG    TF E P  FG   + +      +L I V Q   H
Sbjct: 107 KEWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSH 148


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +1

Query: 367 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 483
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,517
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)