Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_F23
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.67
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.1
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 27 2.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 2.7
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 27 3.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 27 4.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 4.8
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 27 4.8
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 6.3
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 8.3
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 8.3
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.67
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 389 SGMPLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASST--AEFSSVPSAQIN 562
S PL+ +NST+A+ + + + +ST T + S L S S+A+ST SS P + +N
Sbjct: 288 SSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVN 347
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 389 SGMPLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
S PL+ +NST+A+ S L+ ++ T S S LS +++ SS P +N
Sbjct: 421 SSTPLSSANSTTAT-SASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 410 SNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQINPRCRAS 580
++S+ S S++LA SST + S + S S ASS+ SS+ S+ AS
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -1
Query: 493 EAAGMSRGGARLRQGI*HSVSRGTCRIAEVEGHARTVLRLHCSPIRYGVHHLSREQ*NEQ 314
E+AG + ++ + I H+ +C IA+VEG T SP G+ L + N
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEG---TYESYEGSPASQGI--LQYDMWNVN 573
Query: 313 PL*KWDEGFVKGTLCR 266
P WD +K + +
Sbjct: 574 PTDLWDWAELKEKIAK 589
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 389 SGMPLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASST-AEFSSVPSA 553
S P + S++ S+S + S+ + S+++ S S F SP+++SST + SS PS+
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 377 PQNCSGMPLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSA 553
P + P + +S+ +VS+A+ SST+ S S LS S +++ FSS+ S+
Sbjct: 123 PTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSS 181
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 2.7
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -3
Query: 554 APTVRWRIPQYWTR 513
AP+V+WR+P++W +
Sbjct: 191 APSVKWRMPRFWLK 204
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 563 DLSAPTVRWRIPQYWTRCLGIAGRSCGNVTW 471
DL ++ ++ Q+W C G+ GN +W
Sbjct: 958 DLLKARIKDKVKQFWILCKGLESTPYGNSSW 988
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 410 SNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSS 541
S+S+S+S + S++ + S+++ S S SPS++ S+++FSS
Sbjct: 180 SSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSS 223
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 450 PWRSLAPPRDIPAASSCYPQAPRPVLRNS 536
PW+ ++ PR+IPA S + VLR S
Sbjct: 6 PWKLISSPRNIPARSFLNSRGTYLVLRKS 34
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 435 TLCQMPWRSLAPPRDI 482
+L MPWRS+APP+ +
Sbjct: 298 SLLPMPWRSVAPPKTL 313
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 395 MPLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPS 550
+P+++ S+S+S S SS++ S + SPS SST S+ S
Sbjct: 104 IPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISS 155
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 475 VTFPQLLPAIPKHRVQYCGILQRTV 549
+TF +LL + +H+++ CGIL++ V
Sbjct: 794 ITFDELLAKV-EHKIKLCGILKQAV 817
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 591 YCPPDARQRGFICADGTLENS--AVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALV 418
+ P + ++C G L+ S + LD ++ + RK L H +L+F ++ S E +
Sbjct: 213 FAPDNQSAWNYLC--GVLDKSGPSKLDNLIANLRKNLPALHKPLLEFLAMYEPSSSEEIY 270
Query: 417 ELL 409
+ L
Sbjct: 271 QKL 273
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 468 VLDFAKAFDTVSHEALVELLRL 403
V DF +AFD+++H+ ++ L L
Sbjct: 615 VPDFVEAFDSINHDVIITLSEL 636
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 401 LNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSA 553
LNL S SN+ +T R FF P T+S+T SS S+
Sbjct: 86 LNLERSLLNYKSLKSNSTTTVATVPSEKRYFFRRKPKTSSTTNSLSSSSSS 136
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 393 PEQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS----SRGPSVADTLQRGDGP 238
PE ++ +L ++TTL V NE+ P SG +G+ PS+ L D P
Sbjct: 308 PENTSYFVLNL---SNTTLNVKNELCFPIPSGKKGAPVFRKHFPSILQELNSLDPP 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,498
Number of Sequences: 5004
Number of extensions: 54786
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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