Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_F23
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 49 6e-06
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 46 4e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 42 9e-04
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 35 0.076
12_01_0024 + 178539-179418,179593-179938,180127-180244 33 0.23
03_04_0145 + 17683681-17683982,17686058-17686145 33 0.23
02_04_0486 - 23351960-23353093 32 0.71
02_04_0483 - 23305492-23306625 32 0.71
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 32 0.71
08_02_1608 - 28205483-28205851,28206244-28206522 31 0.94
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 31 0.94
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 2.2
05_03_0062 - 7917596-7918129,7918279-7918447,7919007-7919182,791... 29 3.8
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 29 5.0
12_01_0444 - 3502460-3502522,3502737-3502741,3502987-3503051,350... 29 5.0
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 29 6.6
08_01_0010 + 80052-81419 29 6.6
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 6.6
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 6.6
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 48.8 bits (111), Expect = 6e-06
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Frame = -2
Query: 486 RECHVAV--LDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSS 313
R+C + LDFAKAFD+V+ ++L ++L ++G P+ + +I +L T+ + + ++
Sbjct: 32 RKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGK 91
Query: 312 --PCKSGTR-GSSRGP----SVADTLQR 250
CK G R G P VAD LQR
Sbjct: 92 WITCKKGLRQGDPLSPYLFILVADVLQR 119
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -3
Query: 296 RGVRQGDPLSPILFNVVMDLILASLPER 213
+G+RQGDPLSP LF +V D +L L ER
Sbjct: 97 KGLRQGDPLSPYLFILVAD-VLQRLLER 123
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = -2
Query: 486 RECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNN--EMSS 313
RE + LDF KAFDT+ H A++ +++ G P ++ ++ ++ TAS+ + +N S
Sbjct: 449 REIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSF 508
Query: 312 PCKSGTR 292
C+ G R
Sbjct: 509 KCRRGVR 515
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = -2
Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
Q GF+ EN ++ ++ + + LDF KAFD+V +L ++L +RG P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
Query: 390 EQFCGYIAHLYDTASTTLAVN 328
E + +I L ++ + + +N
Sbjct: 1081 ENWISWIKGLLSSSKSAVLLN 1101
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 35.1 bits (77), Expect = 0.076
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 311 PVKVGRGVRQGDPLSPILFNVVMDLILASLPERV 210
P K RG+RQGDPLSP+LF V+ + A L ++V
Sbjct: 226 PFKPMRGLRQGDPLSPLLF--VLKAMSAGLLDKV 257
>12_01_0024 + 178539-179418,179593-179938,180127-180244
Length = 447
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -3
Query: 305 KVGRGVRQGDPLSPILF 255
K RGVRQGDPLSP+LF
Sbjct: 21 KCRRGVRQGDPLSPLLF 37
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3
Query: 296 RGVRQGDPLSPILFNVVMDL 237
RGVRQGDPLSP+LF + +L
Sbjct: 104 RGVRQGDPLSPLLFVIGAEL 123
>02_04_0486 - 23351960-23353093
Length = 377
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -3
Query: 584 PLMHDSADLSAPTVRWRIPQYWTRCLGIAGR--SCGNVTWR-C*TSPRHLTQCLTR 426
PL+ +AD+ VR+ P Y+ RC IA + R C +S +HLT CL R
Sbjct: 58 PLLLSAADIGVTNVRYYSP-YYHRCFEIADTLLKVPKIAARICCSSGQHLTLCLPR 112
>02_04_0483 - 23305492-23306625
Length = 377
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -3
Query: 584 PLMHDSADLSAPTVRWRIPQYWTRCLGIAGR--SCGNVTWR-C*TSPRHLTQCLTR 426
PL+ +AD+ VR+ P Y+ RC IA + R C +S +HLT CL R
Sbjct: 58 PLLLSAADIGVTNVRYYSP-YYHRCFEIADTLLKVPKIAARICCSSGQHLTLCLPR 112
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 31.9 bits (69), Expect = 0.71
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 296 RGVRQGDPLSPILFNVVMD 240
RG+RQGDPLSP LF + D
Sbjct: 279 RGLRQGDPLSPYLFLFIAD 297
>08_02_1608 - 28205483-28205851,28206244-28206522
Length = 215
Score = 31.5 bits (68), Expect = 0.94
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = -2
Query: 561 FICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQF 382
+ C + + A + V G S H+ V D +A T+S+EA RLR +
Sbjct: 27 YFCHEQGAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQA---RLR---DPI 80
Query: 381 CGYIAHLYDTASTTLAVNNEMSSPCKSGTRGSSRGPSVA 265
G +AH++ +++ ++ S T+G G S++
Sbjct: 81 YGCVAHIFSLQQQVVSLQAQLESLKAQATQGYGDGCSIS 119
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 296 RGVRQGDPLSPILFNVVMDLI 234
RGVRQGDPL P+LF + +L+
Sbjct: 548 RGVRQGDPLPPLLFVLGAELL 568
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 296 RGVRQGDPLSPILF 255
RG+RQGDP+SP LF
Sbjct: 313 RGIRQGDPISPYLF 326
>05_03_0062 -
7917596-7918129,7918279-7918447,7919007-7919182,
7919235-7919360,7920196-7920342
Length = 383
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 296 RGVRQGDPLSPILF 255
RG+RQGDP+SP LF
Sbjct: 54 RGLRQGDPISPYLF 67
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -2
Query: 495 KKLRECHVAVLDFAKAFDTVSHEALVELL 409
KKL+ ++ V D +KAFD VSH+ +++++
Sbjct: 286 KKLK-VYIVVADVSKAFDCVSHDMVLKMI 313
>12_01_0444 -
3502460-3502522,3502737-3502741,3502987-3503051,
3503301-3503369,3503487-3503579,3503667-3503770,
3503926-3504006,3504096-3504167,3504227-3504231,
3505788-3505865,3506849-3506978,3507216-3507406,
3507528-3507588,3507916-3508025,3508155-3508239
Length = 403
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 402 STSAIRQVPRETLCQMPWRSLAPPRDIPAASSCYPQAPRPVLRNSP 539
ST + +P + +C + L+PP + A SC P + L SP
Sbjct: 80 STHSWEDIPEQNVC-LTKPDLSPPERVQEAVSCLPASLESTLAGSP 124
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 28.7 bits (61), Expect = 6.6
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 7/127 (5%)
Frame = +3
Query: 180 GHEFHLQPIPDPLRQGSQDEVHHHVEEYRRQRVPLTNPSSHFYRGCSFHCSRLRWWTPYR 359
GH FH Q IPD ++ EV +E YR + Y G + L
Sbjct: 139 GHRFHCQDIPDDY---AKVEVRTVIEAYRMHELDFPTTEQIVYLGDAVDQFILWHKNDIE 195
Query: 360 IGE-QCSRRTVR--ACPSTSAIRQVPRETLCQMPWRS----LAPPRDIPAASSCYPQAPR 518
+G + R R PS + PR++ P R +PP P +S P P
Sbjct: 196 LGSTDGTDRPPRIPVSPSRPPVVASPRDSPIASPSRPEPPVASPPGPEPPVAS--PPVPE 253
Query: 519 PVLRNSP 539
P + + P
Sbjct: 254 PQVASPP 260
>08_01_0010 + 80052-81419
Length = 455
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 406 VEGHARTVLRLHCSPIRYGVHHLSREQ*NEQPL*KWDEGFVKGTL 272
V H V L P R V H+SRE W +GF+KG L
Sbjct: 245 VARHPAAVRELRAGPSRMRVVHISREA--------WKQGFIKGAL 281
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 98 HSPQQRWTPASLPSTPQA 151
HS ++ W P SLP TPQ+
Sbjct: 687 HSSEECWNPNSLPDTPQS 704
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 77 VGPSAYRHSPQQRWTPASLPSTPQAGLGRQHRPERTRVPSP 199
VGPSA + + QQ PAS P A R+ P RV SP
Sbjct: 241 VGPSAEKATKQQPRKPAS-PQRKPAPSPRRRSPPSRRVESP 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,152,441
Number of Sequences: 37544
Number of extensions: 476431
Number of successful extensions: 1703
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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