Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F23
         (895 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...    79   8e-15
U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote...    31   2.8  
U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b prote...    31   2.8  
U02279-1|AAA18301.1|  964|Drosophila melanogaster protein ( Dros...    31   2.8  
BT015207-1|AAT94436.1|  542|Drosophila melanogaster RE58041p pro...    31   2.8  
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    31   2.8  
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ...    31   2.8  
AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      31   2.8  
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ...    31   2.8  
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ...    31   2.8  
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ...    31   2.8  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    31   2.8  
AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB...    31   2.8  
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA...    31   2.8  
BT023682-1|AAY85082.1|  142|Drosophila melanogaster IP04259p pro...    30   4.9  
AY113540-1|AAM29545.1|  372|Drosophila melanogaster RE61424p pro...    30   4.9  
AE014297-3654|AAF56354.1|  142|Drosophila melanogaster CG13641-P...    30   4.9  
AE013599-874|AAF58929.1|  372|Drosophila melanogaster CG1888-PA ...    30   4.9  
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever...    29   8.6  
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    29   8.6  
BT029081-1|ABJ17014.1|  339|Drosophila melanogaster IP10546p pro...    29   8.6  
AE014296-2627|AAF49545.1|  339|Drosophila melanogaster CG13075-P...    29   8.6  

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type II retrotransposable
           element  R2Dm.  ).
          Length = 1057

 Score = 79.0 bits (186), Expect = 8e-15
 Identities = 34/81 (41%), Positives = 52/81 (64%)
 Frame = -2

Query: 579 DARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLR 400
           D RQRGF+  DG  +N+ ++D VL  S K  R C++A LD +KAFD++SH ++ + LR  
Sbjct: 443 DPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAY 502

Query: 399 GMPEQFCGYIAHLYDTASTTL 337
           G P+ F  Y+ + Y+   T+L
Sbjct: 503 GAPKGFVDYVQNTYEGGGTSL 523



 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 43/79 (54%)
 Frame = -3

Query: 296 RGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMEXXXXXXXXXXXXXXAGSKVGMQES 117
           RGV+QGDPLSPILFN+VMD +L +LP  +G ++                 A +++G+Q  
Sbjct: 537 RGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQVL 596

Query: 116 ISAVDCVGRQMGLRLNCRK 60
           +         +GL+LN  K
Sbjct: 597 LDKTLDFLSIVGLKLNADK 615


>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
           protein.
          Length = 1180

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 398 PLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
           P     S      T SN+L  SSTA+  S S  LL  +TAS+ A  ++  +A  N
Sbjct: 332 PAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAAAAAAAASAN 386


>U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b protein
           protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 398 PLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
           P     S      T SN+L  SSTA+  S S  LL  +TAS+ A  ++  +A  N
Sbjct: 58  PAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAAAAAAAASAN 112


>U02279-1|AAA18301.1|  964|Drosophila melanogaster protein (
           Drosophila melanogastertelomere-associated transposons
           TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
           cds. ).
          Length = 964

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 477 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 534

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 535 PYNLYIILESYLT-NRTFEVKDQAGETSRAGQIGA 568


>BT015207-1|AAT94436.1|  542|Drosophila melanogaster RE58041p
           protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 398 PLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
           P     S      T SN+L  SSTA+  S S  LL  +TAS+ A  ++  +A  N
Sbjct: 58  PAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAAAAAAAASAN 112


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 605 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 662

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 663 PYNLYIILESYLT-NRTFEVKDQAGETSRTGQIGA 696


>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 650

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 651 PYNLYIILESYLT-NRTFEVKDQAGETSRAGQIGA 684


>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF     T+  +  L   + +S +  +   +  LD   AFDTV H+ L+  L++ G P
Sbjct: 573 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTP 632

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSP--CKSGT-RGSSRGPSV 268
                 + +       ++ +N+  S+     +G  +GS  GP++
Sbjct: 633 IYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 676


>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 650

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 651 PYNLYIILESYLT-NRTFEVKDQAGETSRAGQIGA 684


>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
           protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 555 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 612

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 613 PYNLYIILESYLT-NRTFEVKDQAGETSRAGQIGA 646


>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    GT +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 650

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 651 PYNLYIILESYLT-NRTFEVKDQAGETSRAGQIGA 684


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF     T+  +  L   + +S +  +   +  LD   AFDTV H+ L+  L++ G P
Sbjct: 521 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTP 580

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSP--CKSGT-RGSSRGPSV 268
                 + +       ++ +N+  S+     +G  +GS  GP++
Sbjct: 581 IYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 624


>AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB,
           isoform B protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 398 PLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
           P     S      T SN+L  SSTA+  S S  LL  +TAS+ A  ++  +A  N
Sbjct: 58  PAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAAAAAAAASAN 112


>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
           isoform A protein.
          Length = 1186

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 398 PLNLSNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSAQIN 562
           P     S      T SN+L  SSTA+  S S  LL  +TAS+ A  ++  +A  N
Sbjct: 338 PAQFGGSHHGGASTSSNSLNSSSTASSSSTSSSLLHYTTASAAAAAAAAAAASAN 392


>BT023682-1|AAY85082.1|  142|Drosophila melanogaster IP04259p
           protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 468 PPRDIPAASSCYPQAPRPVLRNSPAYXXXXXXXAVVH 578
           PPR +PAA+  YP  P   +R SP Y       A VH
Sbjct: 88  PPRPVPAANDYYP--PPWSVRPSPGYYSQPSHPASVH 122


>AY113540-1|AAM29545.1|  372|Drosophila melanogaster RE61424p
           protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
 Frame = +3

Query: 135 LRPRKQD*VVSIG--QSGHEFHLQPIPDPLRQGSQDEVHHHVEEYRR-QRVPLTNPSSHF 305
           L P  QD  +++   Q     HL  +    R G++    HH+E +RR   VPL       
Sbjct: 54  LLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRRWLNVPLQGAQG-- 111

Query: 306 YRGCSFHCSRLRWWTPYRIGE-QCSRRTV--RACPSTSAIRQVPRETLCQMPWRSLAPPR 476
            +G S HCS  R   P  +G+ QC  ++      PS       P + +  +P  SL    
Sbjct: 112 -QGSS-HCSGCR--CPEILGQSQCQEQSPLHMEQPSEQEELHKPEDLVKTIPAESLVALS 167

Query: 477 DIPAASSCYP 506
           D    S  +P
Sbjct: 168 DPREMSVPFP 177


>AE014297-3654|AAF56354.1|  142|Drosophila melanogaster CG13641-PA
           protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 468 PPRDIPAASSCYPQAPRPVLRNSPAYXXXXXXXAVVH 578
           PPR +PAA+  YP  P   +R SP Y       A VH
Sbjct: 88  PPRPVPAANDYYP--PPWSVRPSPGYYSQPSHPASVH 122


>AE013599-874|AAF58929.1|  372|Drosophila melanogaster CG1888-PA
           protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
 Frame = +3

Query: 135 LRPRKQD*VVSIG--QSGHEFHLQPIPDPLRQGSQDEVHHHVEEYRR-QRVPLTNPSSHF 305
           L P  QD  +++   Q     HL  +    R G++    HH+E +RR   VPL       
Sbjct: 54  LLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRRWLNVPLQGAQG-- 111

Query: 306 YRGCSFHCSRLRWWTPYRIGE-QCSRRTV--RACPSTSAIRQVPRETLCQMPWRSLAPPR 476
            +G S HCS  R   P  +G+ QC  ++      PS       P + +  +P  SL    
Sbjct: 112 -QGSS-HCSGCR--CPEILGQSQCQEQSPLHMEQPSEQEELHKPEDLVKTIPAESLVALS 167

Query: 477 DIPAASSCYP 506
           D    S  +P
Sbjct: 168 DPREMSVPFP 177


>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
           transcriptase protein.
          Length = 1084

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 25/95 (26%), Positives = 43/95 (45%)
 Frame = -2

Query: 570 QRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMP 391
           Q GF    G+ +  A +   + ++ ++   C    LD ++AFD V HE L  LL+L  + 
Sbjct: 593 QFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGL--LLKLAKIL 650

Query: 390 EQFCGYIAHLYDTASTTLAVNNEMSSPCKSGTRGS 286
                 I   Y T + T  V ++     ++G  G+
Sbjct: 651 PYNLYIILESYLT-NRTFEVKDQAGETSRTGQIGA 684


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
           protein.
          Length = 1219

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 474 VAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSP 310
           +  LDF++AFD V   ++++ L+      +   YI +       T+ V    SSP
Sbjct: 572 LVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSP 626


>BT029081-1|ABJ17014.1|  339|Drosophila melanogaster IP10546p
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 377 PQNCSGMPLNL-SNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSA 553
           P +CS       S+S+S +  T S++ + S+TA+  + S    +P+TASS+A  S+  S 
Sbjct: 248 PTSCSDTTTQSPSDSSSTASSTESSSESSSTTASSTASSSTESTPTTASSSASSSTESST 307

Query: 554 Q 556
           +
Sbjct: 308 E 308


>AE014296-2627|AAF49545.1|  339|Drosophila melanogaster CG13075-PA
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 377 PQNCSGMPLNL-SNSTSAS*DTVSNALAKSSTAT*HSRSFFLLSPSTASSTAEFSSVPSA 553
           P +CS       S+S+S +  T S++ + S+TA+  + S    +P+TASS+A  S+  S 
Sbjct: 248 PTSCSDTTTQSPSDSSSTASSTESSSESSSTTASSTASSSTESTPTTASSSASSSTESST 307

Query: 554 Q 556
           +
Sbjct: 308 E 308


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,991,047
Number of Sequences: 53049
Number of extensions: 740015
Number of successful extensions: 2921
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2911
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)