Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F20
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1836 + 40228508-40230448                                         29   3.2  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.2  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    29   5.5  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.5  
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897...    29   5.5  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.5  

>01_06_1836 + 40228508-40230448
          Length = 646

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 592 EGVGAGXKASVSSEAPSXY-XTPSSLGMXKGVSPLIFK 482
           E  GAG +ASVS E  S Y  +P ++G  +G++ ++ +
Sbjct: 194 ESGGAGGRASVSDEEISPYLISPDTVGALRGIADVMLR 231


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 83  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 589 GVGAGXKASVSSEAPSXYXTPSSLGMXKGVSPL 491
           G G G  +  SS +PS   TP+++G   G +P+
Sbjct: 22  GGGGGFGSETSSASPSAPGTPTAMGAGGGAAPI 54


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 75  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 221
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>05_07_0286 -
           28988294-28988383,28988486-28989007,28989117-28989758,
           28990554-28990597,28990836-28991016
          Length = 492

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 661 IPDSXHQPP*T*XPF--PSIP*PXIEGVGAGXKASVSSEA 548
           +P    QPP    PF  PSIP P   G G G  A V+  A
Sbjct: 340 LPAPMQQPPPATPPFFPPSIPFPASSGAGDGTGAGVAKVA 379


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 242  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 63
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 62   ILHSF 48
            +LHSF
Sbjct: 1408 LLHSF 1412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,413
Number of Sequences: 37544
Number of extensions: 305182
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)