Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F14
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    27   2.4  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   2.4  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    27   3.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   7.2  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    26   7.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.5  

>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 265 LHVGPRGCGRGHAEDARPQEHRQARPGPVPRAEA*AGHSR 146
           LH+        H    RP   R  RP P  RA A AG+ R
Sbjct: 80  LHLPAEVVPATHKRQVRPTAPRAGRPEPRERASADAGYRR 119


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 197 LPMFLRSCIFCMASPTSSRAHVESTMGLTLPCAHRVK 307
           LPM ++   FC+A+PT+ +  + +   L LP    ++
Sbjct: 711 LPMHMQRLFFCLANPTAEQ-RITAQEALNLPFVQEIE 746


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 282 VKPIVDSTWALEDVGEAMQKMHDRRNIGKLVL 187
           +K ++DS +  ED  EA  ++   R  GK+++
Sbjct: 313 IKTVIDSVYDFEDTVEAFNRLMTHRCKGKVII 344


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 513 PLASEANTRGLHSSPQRQSSTMSTPSGSYLPDFAG 617
           P  S +N   +H+S  ++SST S+PS +    F+G
Sbjct: 461 PATSPSNQASIHASFTKESSTHSSPSFTLESLFSG 495


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 435 WQVDKVSPIKLFDENKSLAGLNLRHLLFQHGRGDTV 328
           W V +  P++LF  N+      L HL+F +G  D V
Sbjct: 166 WDVSRKPPLQLFTINQHSEDSVLTHLVF-NGNSDDV 200


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 282 VKPIVDSTWALEDVGEAMQKMHDRRNIGKLVL 187
           + P+VD  +  + + EA +    + +IGK+VL
Sbjct: 312 IHPVVDKVFPFDQLKEAYEYQWSQAHIGKVVL 343


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 435 WQVDKVSPIKLFDENKSLAGLNL 367
           W V    P+K+FD + SL G  +
Sbjct: 130 WTVSGSDPVKMFDRHSSLNGTQI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,850
Number of Sequences: 5004
Number of extensions: 49898
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)