Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_F14
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 38 0.007
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 33 0.35
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 32 0.46
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 30 2.5
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 4.3
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 28 7.6
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 28 7.6
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 7.6
03_05_0072 - 20495568-20495635,20495713-20495839,20496119-204963... 28 7.6
12_01_0178 + 1316730-1316949,1317781-1318655 28 10.0
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 28 10.0
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781... 28 10.0
04_03_0559 + 17118319-17118396,17119329-17119467,17119569-171196... 28 10.0
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994... 28 10.0
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -3
Query: 312 SVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRRNIGKLVLDP 181
+V+ QGKVKP++ T+ L + EA + M + +IGK++L P
Sbjct: 295 NVWPAVVQGKVKPVIYKTFPLSEAAEAHKLMEESSHIGKILLIP 338
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 300 LWAQGKVKPIVDSTWALEDVGEAMQKMHDRRNIGKLVLD 184
L +GK++ +VDS + L D +A QK D GK+V++
Sbjct: 295 LVGEGKLRTVVDSRFPLGDAAKAWQKSIDGHATGKIVVE 333
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 370 VQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SIEDVTXHWLQKRIPAGCT 549
+ +QAL +E F H + +PPRT + + G + + T WL + IP C
Sbjct: 532 ISMKQALAFLEDFKLGHYMKIPPRTMFMAQ---VVGTSIAAFVYIGTAWWLMETIPNICN 588
Query: 550 P--LRRDNPAQC 579
L D+P C
Sbjct: 589 TELLPSDSPWTC 600
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 501 LYGSSNIVTGETKSFFSAARAWW 433
+Y IV + K FSAAR WW
Sbjct: 201 IYNKDGIVVYDGKGLFSAARVWW 223
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 304 EDAVHGAPHRVPAPVLEQQVP--QVQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAG 477
+D++H P+P +++ QA V+ V + TG +C+ G
Sbjct: 737 DDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKVSQHTGRIHLYICVPG 796
Query: 478 HDVR 489
HD R
Sbjct: 797 HDSR 800
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 291 QGKVKPIVDSTWALEDVGEAMQKMHDRRNIGKLVL 187
+GKV + D +E EA+ M RN+GKL++
Sbjct: 320 EGKVTVLQDVVKGIEKASEALIGMFSGRNVGKLLV 354
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 370 VQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SIEDVTXHWLQKRIPAGCT 549
+ QAL ++ F H + +PPRT + + G + + T WL + IP C
Sbjct: 529 ISMSQALTFLQDFKLGHYMKIPPRTMFMAQ---VVGTLIAAFVYIGTAWWLMETIPNICN 585
Query: 550 P--LRRDNPAQC 579
L D+P C
Sbjct: 586 TELLPSDSPWTC 597
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 HRV-KTLCTARRTVSPRPCWNSRCRRFKPARL 388
HR + L A RTV+ RP W C R ARL
Sbjct: 213 HRYPEALADAERTVALRPDWAKGCSRLGAARL 244
>03_05_0072 -
20495568-20495635,20495713-20495839,20496119-20496395,
20496542-20496597
Length = 175
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 467 QRASSALPVRGGKWTR-CLRSNCSTRTRAWRA*TCGT 360
+R SAL R G T+ C+ + + R RAWR C T
Sbjct: 37 RRTMSALASREGDSTKACMWESKNRRARAWRGQECAT 73
>12_01_0178 + 1316730-1316949,1317781-1318655
Length = 364
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 574 VLDCLCGEECN-PRVFASEANGPLHPLWII*HRDRRDKELLQRCPCVVASGQG 419
+ D + + C+ RV A N PL ++ HRD D ++ + CP V QG
Sbjct: 271 LFDGVISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQG 323
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 338 PRPCWNS---RCRRFKPARLLFSSNSLIGDTLSTCHHARAALKKLFVSPVTMLDD 493
PRP W + RF PA+LL + + L + K FVS VT++ D
Sbjct: 124 PRPFWLALFVEGTRFTPAKLLAAQEYAVSQGLPAPRNVLIPRTKGFVSAVTIMRD 178
>09_04_0643 +
19176561-19176644,19176761-19176902,19178084-19178172,
19178470-19179195
Length = 346
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 291 QGKVKPIVDSTWALEDVGEAMQKMHDRRNIGKLVLD 184
QGK+K +DS + L EA K + GK+V++
Sbjct: 306 QGKLKTTIDSKYPLSRAQEAWAKSMEGHATGKIVVE 341
>04_03_0559 +
17118319-17118396,17119329-17119467,17119569-17119660,
17119974-17120660
Length = 331
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 300 LWAQGKVKPIVDSTWALEDVGEAMQKMHDRRNIGKLVLD 184
L +GK+K +VDS E EA ++ GK++++
Sbjct: 292 LMREGKLKTVVDSRHPFEKAAEAWERSMSGHATGKVIVE 330
>02_05_0960 +
33097510-33097821,33098846-33099043,33099174-33099446,
33099575-33099677,33100297-33100415,33100968-33101759
Length = 598
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 673 ASCLLWEXTPNTVTFSTVFATGLQLVPT 756
A+C+ W+ + V F T G LVPT
Sbjct: 296 AACMTWDLAESGVHFITTVINGADLVPT 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,902,497
Number of Sequences: 37544
Number of extensions: 452564
Number of successful extensions: 1850
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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