Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F14
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    29   3.9  
U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81094-2|CAB03156.1|  770|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z81094-1|CAB03150.1|  784|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   9.0  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   9.0  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   9.0  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   9.0  

>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 267 DSTWALEDVGEAMQKMHDRRNIG 199
           DS W +E + E ++  H RRN G
Sbjct: 119 DSMWQMEQIMELIENTHSRRNFG 141


>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -3

Query: 540 RGYSLLKPMXRYILYGSSNIVTGETKSFFSAARAWWQVDKVSPIKLFDENKSLAGLNLRH 361
           RGYSL        +Y S   +  +   F++A  ++W    VSP+ +   +KSL    L  
Sbjct: 341 RGYSLNNETDSLTVYDSYQHIVVQMMPFYAAFTSFWAT--VSPVNVQFISKSLTAFPLD- 397

Query: 360 LLFQHGRGDTV 328
              Q GRG +V
Sbjct: 398 ---QIGRGFSV 405


>Z81094-2|CAB03156.1|  770|Caenorhabditis elegans Hypothetical
           protein F58G11.1b protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -3

Query: 252 LEDVGEAMQKMHD-RRNIGKLVLDPSLE 172
           +EDV   + K+ D +RNI ++++DP++E
Sbjct: 566 IEDVDSMVDKLEDEKRNIREMLIDPTVE 593


>Z81094-1|CAB03150.1|  784|Caenorhabditis elegans Hypothetical
           protein F58G11.1a protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -3

Query: 252 LEDVGEAMQKMHD-RRNIGKLVLDPSLE 172
           +EDV   + K+ D +RNI ++++DP++E
Sbjct: 566 IEDVDSMVDKLEDEKRNIREMLIDPTVE 593


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 537  GYSLLKPMXRYILYGSSNIVTGETKSFF 454
            GY+L+ P     +YGS+  +TG+T++ +
Sbjct: 1420 GYTLVSPRCTLSIYGSTIYLTGDTRASY 1447


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 537  GYSLLKPMXRYILYGSSNIVTGETKSFF 454
            GY+L+ P     +YGS+  +TG+T++ +
Sbjct: 1420 GYTLVSPRCTLSIYGSTIYLTGDTRASY 1447


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 671  LKTNNXNIDHLLERGSDYTSEVRKVT 594
            L+  N  IDHL +  +D+TS+VR +T
Sbjct: 1260 LQAANDRIDHLTKTVNDHTSKVRDLT 1285


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 671  LKTNNXNIDHLLERGSDYTSEVRKVT 594
            L+  N  IDHL +  +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 671  LKTNNXNIDHLLERGSDYTSEVRKVT 594
            L+  N  IDHL +  +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,160
Number of Sequences: 27780
Number of extensions: 320694
Number of successful extensions: 1147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)