Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F14
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.7  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 695 CSQSKHEALKTNNXNIDHLLERGSDYTSEVRK 600
           CS  K E  KT+N  + H   R SD    +RK
Sbjct: 93  CSAEKFECSKTSNPCLPH---RNSDRDLNIRK 121


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 297 WAQGKVKPIVDSTWALEDVGEAMQKMHD 214
           W   K+K I+D    LE+     Q  HD
Sbjct: 279 WFLHKMKNIIDYYLVLENTDHTKQLSHD 306


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 644 GRCYXCLSSAP 676
           G CY C+S AP
Sbjct: 321 GDCYYCISGAP 331


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 491 HLTS*PARQRASSALPVRGGKWTRCLRSNCSTRTRA 384
           HLTS PAR  +S A   +  +    L S  ST  R+
Sbjct: 674 HLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARS 709


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 446 PVRGGKWT 423
           P+RGG+WT
Sbjct: 380 PIRGGEWT 387


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 298 QSEDAVHGAPHRVPAPVLEQQVPQ 369
           QS+    GAP   P+P    Q PQ
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQ 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,141
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)