Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_F13
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.051
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.090
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.21
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.48
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 2.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.051
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -3
Query: 573 GGGGXXXRDGXGXGXGGGEXEXXXXXXGGXXGXXGXPGGXXGGXXXGGXXXGRXXXXXRX 394
GGG G G G G GG G G PGG GG G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 393 GXXXXXXXXGXPGXRGRXG 337
G PG G G
Sbjct: 254 FGGGPGGFGGGPGGHGGPG 272
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.090
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +2
Query: 431 PPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPP 574
PP P P P+ P + PPP P P + PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 0.84
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +1
Query: 460 PXXXXXPXPAPXXXXXXFXLPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXPPRPXPS 639
P P PAP P P PP V P PPP + + R P P
Sbjct: 746 PAPIPVPPPAPIMGG-----PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAE 800
Query: 640 P 642
P
Sbjct: 801 P 801
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 392 PXRXXLFXRPXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPS 550
P + P P PP G P P PP + PPP P P P+
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA---GAGPPPPPPPPPA 784
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 517 LPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXPPRPXPSPPXXSPLLPXP 672
L P PP V P P P + A PP P P P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +1
Query: 478 PXPAPXXXXXXFXLPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXPPRPXPSPPXXS 654
P P P PP + P PPP +GA PP P P PP S
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA------GPPPPPPPPPAVS 786
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Frame = +1
Query: 478 PXPAPXXXXXXFXLPXXPXPPXXVPXLX-----PXPPPXXLXSGAXXXXRXXPPRPXPSP 642
P PAP + P PP P + P PPP S P+ P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Frame = +2
Query: 446 PPXXP-PGXPLXPLXPPXXSXXXSLSPPPXP---XPXPSR-XXXP---PPPXXXSXXARX 601
PP P P P L PP + PPP P P PS+ P PPP + +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 602 XXXAXXLPGXXPXRP 646
A LP P P
Sbjct: 184 PPSAPSLPSAVPPMP 198
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Frame = +2
Query: 347 PRXPGXPXXXXXLXSPXRXXLFXRPXXXPPXXX--PPXXPPGXPLXPLXPPXXSXXXSLS 520
P P P L P RP PP PP P+ PP +
Sbjct: 125 PSAPAPPTPQSELRPPTSAP--PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 521 PPPXPXPXPSRXXXPPP 571
PP PS PP
Sbjct: 183 SPPSAPSLPSAVPPMPP 199
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/84 (26%), Positives = 26/84 (30%)
Frame = +2
Query: 320 PPXXRXPXRPRXPGXPXXXXXLXSPXRXXLFXRPXXXPPXXXPPXXPPGXPLXPLXPPXX 499
PP + RP P SP P PP PP P P+ P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPI--PSKAPPIPSS-LPPPAQPAAPVKSPPS 186
Query: 500 SXXXSLSPPPXPXPXPSRXXXPPP 571
+ + PP P P PPP
Sbjct: 187 APSLPSAVPPMPPKVP-----PPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.21
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = +2
Query: 446 PPXXPPGXP--LXPLXPPXXSXXXSLSPP-PXPXPXPSRXXXPPPPXXXSXXARXXXXAX 616
PP PP P P PP + + +PP P P P PP A
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 617 XLPGXXPXRPXXXLXFP 667
LP P P P
Sbjct: 448 PLPPSAPIAPPLPAGMP 464
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 446 PPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXP-XPSRXXXPPPP 574
PP P P PP S ++S PP P P P R PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 446 PPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPP 571
PP PP P S PPP P PS PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 419 PXXXPPXXX--PPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPP 571
P PP P PP P P+ PP + + P P P P P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPS 550
P P P P G P P PP + +PPP P P P+
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPP-----AAPAPPPAPAPAPA 485
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSP--PPXPXPXPSRXXXPP 568
P PP P P P P+ P +P PP P P+ PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 458 PPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPP 574
PP P P P +P P P P PS PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXS-XXXSLSPPPXPXP--------XPSRXXXPPP 571
P PP PP P P+ P + S S PP P P + PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 572 PXXXSXXAR 598
P S R
Sbjct: 314 PPPPSRRNR 322
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPP-----PXPXPXPSRXXXPPP 571
P PP PP PP P P PP +PP P P P+ PP
Sbjct: 416 PVPTPP-SLPPSAPPSLP--PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPPXXXS 586
P PP PP PP S S PP P PS PPPP S
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS---APPPPLPAS 1738
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +2
Query: 431 PPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPP---PXPXPXPSRXXXPPP 571
PP P PP P + PP + PP P P P S P P
Sbjct: 1699 PPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +3
Query: 510 LXSPXXPXPXXXRPAXXXXPP-PXXPPXXRXXXXPXSXSPAXP 635
+ +P P P P PP P PP P S +P+ P
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.48
Identities = 29/127 (22%), Positives = 33/127 (25%), Gaps = 5/127 (3%)
Frame = +1
Query: 307 LPXXPSXXAXPP-PXPXXRXXXXXXXXXXXXXPXXXXSXXXXPXX-GXXSXXXPXXXXXP 480
+P P+ PP P P P + P G P P
Sbjct: 1111 VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 481 XPAPXXXXXXFXLPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXPPRPXPS---PPXX 651
PAP P PP P P P + PP P PS PP
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 652 SPLLPXP 672
P P
Sbjct: 1231 VPTAKAP 1237
Score = 29.1 bits (62), Expect = 0.84
Identities = 33/142 (23%), Positives = 36/142 (25%), Gaps = 3/142 (2%)
Frame = +1
Query: 298 PXXLPXXPSXXAXPPPXPXXRXXXXXXXXXXXXXPXXXXSXXXXPXX---GXXSXXXPXX 468
P +P P PP P P S P G P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 469 XXXPXPAPXXXXXXFXLPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXPPRPXPSPPX 648
P PAP P P P P P P P PP P PP
Sbjct: 1148 AAPPVPAPSGA------PPVPKPSVAAP---PVPAPSSGIPPVPKPAAGVPPVP---PPS 1195
Query: 649 XSPLLPXPWFXXXXCAPXSXXP 714
+P +P P P S P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAP 1217
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/91 (25%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Frame = +1
Query: 448 SXXXPXXXXXPXPAPXXXXXXFXLPXXPXPPXXVPXLXPXPPPXXLXSGAXXXXRXXP-- 621
S P P P LP PP VP P P P
Sbjct: 1003 SPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSA 1062
Query: 622 PRPXPSPPXXSPLLPXPWFXXXXCAPXSXXP 714
P P P+P P +P P AP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/89 (23%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Frame = +2
Query: 317 PPPXXRXPXRPRXPGXPXXXXXLXSPX-RXXLFXRPXXXPPXXXPPXXPPGXPLXPLXPP 493
P P P G P + +P P PP P PP PP
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 494 XXSXXXSLSPPPXP---XPXPSRXXXPPP 571
++ P P P P P PP
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/96 (21%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Frame = +2
Query: 290 PPXLXXXXXPPPXXRXPXRPRXPGXPXXXXXLXSPXRXXLFXRPXXXPPXXXPPXXPPGX 469
PP L P + P P SP P PP P
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA 1029
Query: 470 PLXPLXPPXXSXXXSL--SPPPXPXPXPSRXXXPPP 571
P+ P + + S PP P PPP
Sbjct: 1030 DAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 431 PPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPS 550
PP P PP P+ PP P P P PS
Sbjct: 1032 PPIPVPSTAPP-VPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPP------GXP-LXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPP 574
P PP P PP G P P P S S+ P P P+ PP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -1
Query: 665 GXRGEXXGGEGXGRGGXXRXXXXAPXXRXXGGGXGXXXGTXXGGXGXXGRXK 510
G RG GG G RGG R GG G G+ G G G K
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGR--GGARGGRGGSSGGRGGAKGGAK 72
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 458 PPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPP 568
PPG P P PP PPP P R P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Frame = +2
Query: 521 PPPXPXPX---PSRXXXPPPP 574
PPP P P PS+ PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 713 GXXEXGAQXXXXNXGXGXRGEXXGGEGXGRGG 618
G G G G RG GG G GRGG
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -1
Query: 671 GXGXRGEXXGGEGXGRGGXXRXXXXAPXXRXXGGGXGXXXGTXXGG 534
G G RG GG G RGG GG G G GG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGG 181
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/52 (26%), Positives = 18/52 (34%)
Frame = +2
Query: 419 PXXXPPXXXPPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPP 574
P P PPG PL P+ ++S PP P + P P
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 524 PPXPXPXPSRXXXPPPPXXXS 586
PP P P P+ PPPP S
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRS 751
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/80 (22%), Positives = 23/80 (28%)
Frame = +2
Query: 446 PPXXPPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPPXXXSXXARXXXXAXXLP 625
PP P + PL P + PP P PS P +R + P
Sbjct: 1010 PPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRP 1069
Query: 626 GXXPXRPXXXLXFPXXGSXS 685
P P P + S
Sbjct: 1070 -QIPQPPPVSTALPSSSAVS 1088
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,143
Number of Sequences: 5004
Number of extensions: 16298
Number of successful extensions: 237
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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