Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F13
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.2  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 656 GEXXGGEGXGRGGXXR 609
           G   GG+G G+GG  R
Sbjct: 3   GRGKGGKGLGKGGAKR 18


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 619 PPRPXPSPPXXS 654
           PP+P P PP  S
Sbjct: 338 PPKPAPPPPPPS 349


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/63 (22%), Positives = 17/63 (26%)
 Frame = +2

Query: 458 PPGXPLXPLXPPXXSXXXSLSPPPXPXPXPSRXXXPPPPXXXSXXARXXXXAXXLPGXXP 637
           PP   +  + P   S   S    P     P     P PP               +PG  P
Sbjct: 381 PPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440

Query: 638 XRP 646
             P
Sbjct: 441 TMP 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,225
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)