Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F06
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.8  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   4.2  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   7.3  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.6  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.6  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.6  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 196 IASISAIQMGFDVASRVLNAKTRLVKSHCLEPPD 297
           +AS+  ++   D+A +V + +T ++   CL+P D
Sbjct: 765 LASVGYLEKAIDLAEKVKDFQTMVILLDCLDPKD 798


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 691 ARGARKVTTGITGLWQPSVHSDVAFDPSMSALPIIAKQNSPSVGLFTHQKGT*AGFRPS* 512
           A GAR   T IT   Q S  S V+ +P+ S      + N+P+    + +  T + F    
Sbjct: 145 ASGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSEPRTFSSFEDQY 204

Query: 511 DRL 503
            RL
Sbjct: 205 GRL 207


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 66  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 245
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 476 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 327
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 115 VDDFRSWRGVVLGRAASCCDLLRLS 41
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 404 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 279
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,337
Number of Sequences: 5004
Number of extensions: 67745
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)