Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F06
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.36 
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    30   1.9  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.3  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   5.8  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     29   5.8  
01_06_0695 - 31292622-31293317                                         28   7.6  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 206
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 706 YKEFLARG-ARKVTTGITGLWQPSVHSDVAFD 614
           YK F A G  RKV  GIT  + PS+  D+AFD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 434 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 336
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -2

Query: 494 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 330
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 329 GKDMLTVEPRESGGSK 282
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/107 (23%), Positives = 42/107 (39%)
 Frame = +1

Query: 136 IELSYIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNAKTRLVKSHCLEPPDSRGSTV 315
           I+  ++     + + + + P+A+ +A+ +GF     V  AKT + +  C E  D   S +
Sbjct: 247 IQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKT-VFEKMC-ERDDGTWSAM 304

Query: 316 SISLPDSARLASALEAFRHNPADGSFXXXXXXXXXXTKCPKLRFLSY 456
             +   +  L  AL  FR     G            T C  L  L Y
Sbjct: 305 IKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDY 351


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 30  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 164
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,807,917
Number of Sequences: 37544
Number of extensions: 498953
Number of successful extensions: 1347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)