Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_F06
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 30 2.3
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 30 2.3
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 3.0
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 3.0
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 3.0
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 28 6.9
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 28 6.9
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/116 (24%), Positives = 44/116 (37%)
Frame = +3
Query: 141 TELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 320
TEL+ D+ + RV S +R GL R +NA + +G EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523
Query: 321 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 488
+ R V SR + T GRS + + + S+ A + + T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/116 (24%), Positives = 44/116 (37%)
Frame = +3
Query: 141 TELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 320
TEL+ D+ + RV S +R GL R +NA + +G EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523
Query: 321 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 488
+ R V SR + T GRS + + + S+ A + + T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 673 VTTGITGL----WQPSVHSDVAFDPSMSALPIIAKQNSPSV 563
VTTG++ L W P+ + A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 148 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNAKTRLV 270
YIRT +VLRKKP S+ D +++NA LV
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNALQGLV 304
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 126 EPRHRTELYPDLRSRDARVKKKTDSI--DLRDPNGLRRRVSRFECENATSKV 275
E +R +L + R + + + + D+ P G+ VS +CE AT KV
Sbjct: 395 EEENREDLLGSISERSSNIPADANGLVSDVEVPEGILVDVSSVDCEEATRKV 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,424
Number of Sequences: 27780
Number of extensions: 392900
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -