Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F05
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   259   2e-69
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    29   5.4  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  259 bits (634), Expect = 2e-69
 Identities = 117/191 (61%), Positives = 140/191 (73%)
 Frame = -2

Query: 696 QDHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFN 517
           ++HIPRVGDFNES YYME   GHPVF T+YG+I +NIC+GRHH  NWMM+  NGAEI+FN
Sbjct: 198 KNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMYALNGAEIIFN 257

Query: 516 PSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLF 337
           PSAT+     SE +W +EARNAAI N  FT  INRVG E FPNEFTS +G+PAHKD G F
Sbjct: 258 PSATVGAL--SEPLWGIEARNAAIANHVFTVGINRVGTEVFPNEFTSGNGQPAHKDFGHF 315

Query: 336 YGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVL 157
           YGSSY   PDG R P LSR R+G+LIA +DLNL RQ +D   + MT RLDMY   +++V 
Sbjct: 316 YGSSYIAAPDGSRTPALSRVREGVLIAELDLNLCRQCKDAWGFRMTNRLDMYAQKITEVS 375

Query: 156 ELDYKPQVVHE 124
             DY+P +  E
Sbjct: 376 NPDYRPDIRRE 386



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 829 FLRELPIKXQWDXSSK-LERDEKHSDILWNTAVVIRTPENVIGSIARPH 686
           FL +L +K      S  LERDE+  D++WNTAVVI     VIG   + H
Sbjct: 152 FLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVIGRSRKNH 200


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +1

Query: 460 SFNVPHVLAAAFSGDRR*RIKNDLSSILSEHHPVQDVVPSEADVHRDLAVSGREYRMAGV 639
           SFNV  +    + G++R + + ++   + +H  +QD+ P+   + RD  +     ++AG+
Sbjct: 21  SFNVDKLTEYYYGGEKRLKARREVEKCVEDHKELQDLKPTPF-MSRDELIDNSVRKLAGM 79


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 CSRTCPGVGSCNNNVCL*SVCSGSSPRPRLTSRLWC 281
           C++TC G  S     CL S CSG S R ++ ++  C
Sbjct: 35  CTKTCGGGVSRQLRRCLTSKCSGESVRFKVCAQKTC 70


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 558 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 394
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387


>AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical
           protein W05G11.6c protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 558 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 394
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 47  WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 102


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 558 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 394
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 222 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 277


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -2

Query: 558 WMMFGQNGAEIVFNPSATIAGEG-GSEYMWNVEARNAAITNCYFTAAINRVGYEEF 394
           WM FG +G     NP A   G   G+ +  N  A  +   N  FT        E F
Sbjct: 332 WMKFGADGRLYAINPEAGFFGVAPGTSHKTNAMAMESCRANTIFTNVAETADGEYF 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,471
Number of Sequences: 27780
Number of extensions: 404258
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)