Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F03
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    36   0.043
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    30   2.1  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        30   2.1  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    30   2.1  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   2.8  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   4.9  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 464 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFFPTETC 637
           P+ ++CQ+  S+  T  TCIR    N+ ++      +  + R  S+ LQ+C     T TC
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149

Query: 638 LLSCLLAC 661
             SC  AC
Sbjct: 150 SNSCSNAC 157


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +2

Query: 392 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 553
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +2

Query: 392 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 553
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 139 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 38
           +LWQ+    +TC P LQ   ++W  L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 2.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 467 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 562
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 23.8 bits (49), Expect(2) = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 317 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 415
           S L + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +2

Query: 389 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 562
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 310 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 441
           A + P  T   S  + PP    TA   + +    NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,698
Number of Sequences: 27780
Number of extensions: 378232
Number of successful extensions: 1268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)