Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F02
         (823 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...   137   3e-31
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru...    40   0.057
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ...    40   0.099
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   4.9  
UniRef50_Q1QHE7 Cluster: OmpA/MotB precursor; n=2; Nitrobacter|R...    34   4.9  
UniRef50_A6R1B1 Cluster: Predicted protein; n=1; Ajellomyces cap...    34   4.9  
UniRef50_A5UXF4 Cluster: N-6 DNA methylase; n=1; Roseiflexus sp....    33   8.6  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score =  137 bits (332), Expect = 3e-31
 Identities = 65/71 (91%), Positives = 65/71 (91%)
 Frame = -1

Query: 724 ALMHQATXPWDFGYINXIIKSXIPYTNHPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSI 545
           ALMHQAT P D GYIN IIKS IPYTNHPRLNIHFHQS DAVLEGVRAGVKASVVIRGSI
Sbjct: 167 ALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIRGSI 226

Query: 544 SVSHPLVTGHG 512
           SVSHPLVTGHG
Sbjct: 227 SVSHPLVTGHG 237


>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
           virus|Rep: Coat protein - Grapevine fleck virus
          Length = 230

 Score = 40.3 bits (90), Expect = 0.057
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -1

Query: 700 PWDFGYINXIIKSXIPYTNHPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSISVSHPL 527
           P +   +N  IK  + YT+ PRL   F+++   V  G  A +  S++IRG I  S P+
Sbjct: 166 PAELSSLNPTIKDSVTYTDCPRLTCGFYRNDACVALGSSAPICGSILIRGVIECSAPI 223


>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
           Globe virus|Rep: 25kDa coat protein - Grapevine Red
           Globe virus
          Length = 235

 Score = 39.5 bits (88), Expect = 0.099
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 700 PWDFGYINXIIKSXIPYTNHPRLNIHFHQSPDAVLEGVRAGV-KASVVIRGSISVS 536
           P D    N ++K  + Y N P+L + FH++ DA    V   V   S+VIRG +  S
Sbjct: 170 PADLRSTNPVVKDTVSYNNTPKLTVAFHKNTDAPAVSVTTPVIYGSIVIRGVVRCS 225


>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 263 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 150
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_Q1QHE7 Cluster: OmpA/MotB precursor; n=2; Nitrobacter|Rep:
           OmpA/MotB precursor - Nitrobacter hamburgensis (strain
           X14 / DSM 10229)
          Length = 673

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 651 TPTTPDLTSIS--INPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 493
           TP  PD+T  S    P TP     +P   PP  + AP+A   P+     K  +PP
Sbjct: 246 TPAAPDVTPTSPRATPATPSAPVASPAATPPSGAAAPAAATPPTGPAGTKAGTPP 300


>UniRef50_A6R1B1 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 308

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +2

Query: 542 ADGASDDNGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNXGFDDXVDVPEIPGXGG 709
           ADGA     G  PGA     G  G  EM ++    G+ N G  +    P   G GG
Sbjct: 170 ADGAGSVEDGIEPGAKRLKRGGEGATEMAIRRSRPGIGNGGVAEVEGEPGEVGGGG 225


>UniRef50_A5UXF4 Cluster: N-6 DNA methylase; n=1; Roseiflexus sp.
           RS-1|Rep: N-6 DNA methylase - Roseiflexus sp. RS-1
          Length = 926

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 599 YGVRGLME-MDVKSGVVGVWNXGFDDXVDVPEIPGXGGLMHKGKPQYYAK 745
           Y + G++E +  + GVV +W  GFDD   VP  P   G M + +  + AK
Sbjct: 827 YIISGIVEEVQAEKGVVSLWISGFDDAQTVPIDPLMPGWMLRPETPFRAK 876


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,546,165
Number of Sequences: 1657284
Number of extensions: 14760131
Number of successful extensions: 40731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40659
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)