Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_F01
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    31   1.3  
05_05_0191 + 23127068-23127331,23127514-23127546                       31   1.3  
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           29   3.1  
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    28   7.2  

>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 429 ADYSPNPDHAGASHRRLPRHVLTDPSDPITF 337
           AD  PNP  A  SH +   HV + P  P+ F
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPVVF 162


>05_05_0191 + 23127068-23127331,23127514-23127546
          Length = 98

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 89  SQEGWDLQTATRPKET*QLKSSCFANESTTRSESRPAEKIRRETQR 226
           +Q  W+ + A R KET +L+S   A E+ T+SE    +++ R+ ++
Sbjct: 32  AQRVWEAEMAHRLKETEELQSWA-ATEAPTKSEEEKRKRVHRKLEK 76


>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -2

Query: 444 LIVAAADYSPNPDHAGASHRRLPRHVLT 361
           L   AAD +P P   GA  RRLPR V T
Sbjct: 12  LATGAADQAPAPAALGALRRRLPRVVTT 39


>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 26  RITGGPEAFPVSPGQVSEQRLSQEGWDLQTATRPKET*QLKSSCFANESTTRSESRPAEK 205
           R+ GG  +  +  G+ +EQ+LS    D Q A RP+     +    A+    +S  RP E+
Sbjct: 255 RLGGGLGSSRIG-GENAEQKLSTR--DQQHAGRPRSEEPRRDERRADRDREKSRERPRER 311

Query: 206 IRRETQRADS 235
            R E  R  S
Sbjct: 312 DRDERTRERS 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,568
Number of Sequences: 37544
Number of extensions: 297735
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)