Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_E23
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 220 2e-58
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 146 3e-36
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 112 7e-26
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 105 8e-24
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 74 2e-14
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 43 5e-05
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 5.8
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 7.6
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 7.6
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 220 bits (538), Expect = 2e-58
Identities = 94/173 (54%), Positives = 128/173 (73%)
Frame = -1
Query: 768 PXXFXRPXGXEEXPNPXKEKFQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVHAKAMRK 589
P F RP E + +EKF VPESDHL L +Y W+ N YS+ WC++HF+H+K +++
Sbjct: 941 PSVFYRPKERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKR 1000
Query: 588 VREVRQQLKDIXQQQRLPLVSCGTDWXTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCH 409
R++RQQL +I +Q++ L S +DW VR+ +CSAYF QAA KGIGEYV+ R+GMPCH
Sbjct: 1001 ARDIRQQLVEIMSKQKISLESV-SDWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCH 1059
Query: 408 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKE 250
LH TS+L+GLG PDYV+YHEL +T++EYM+ VT+VD WLAE G +++SVKE
Sbjct: 1060 LHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKE 1112
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 146 bits (355), Expect = 3e-36
Identities = 67/183 (36%), Positives = 103/183 (56%), Gaps = 1/183 (0%)
Frame = -1
Query: 768 PXXFXRPXGXEEXPNPXKEKFQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVHAKAMRK 589
P + RP ++ + + +F PESDHLT L +Y WK N S WC EH++ A+ MR+
Sbjct: 961 PNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRR 1020
Query: 588 VREVRQQLKDIXQQQRLPLVSCGTDWXTVRKCICSAYFQQAA-RLKGIGEYVNCRTGMPC 412
+VR+QL + + R P+VSCG + + +CS YF A R G Y P
Sbjct: 1021 AEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPV 1080
Query: 411 HLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKETGKSNR 232
++HP+ LFG + ++V+YHEL T++EYMH V+ V+ +WL E+ P FF + ++
Sbjct: 1081 YMHPSGVLFGK--AAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSK 1138
Query: 231 DKR 223
K+
Sbjct: 1139 TKK 1141
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 112 bits (269), Expect = 7e-26
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Frame = -1
Query: 768 PXXFXRPXGXEEXPNPXKEKFQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVHAKAMRK 589
P F RP + + +++F P+ DHLT L +Y+ +KS ++ WC HF+ +A+
Sbjct: 534 PNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALIS 593
Query: 588 VREVRQQLKDIXQQQRLPLVSCGTD----WXTVRKCICSAYFQQAARLKGIGE-YVNCRT 424
VR+QL+ ++Q + L+S D + +R+ + S +F Q A+ G+ YV +
Sbjct: 594 ADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKD 653
Query: 423 GMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKE 250
LHP+ GL +P++VVY+E +T + ++ VTA+ WL EL P ++ + +
Sbjct: 654 NQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDD 708
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 105 bits (252), Expect = 8e-24
Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Frame = -1
Query: 759 FXRPXGXEEXPNPXKEKFQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVHAKAMRKVRE 580
F RP + + F P DHLT L ++N+W ++S W E+F+ K++ + R+
Sbjct: 873 FYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARD 932
Query: 579 VRQQLKDIXQQQRLPLVSCGTD-WXTVRKCICSAYFQQAARLKGIGE-YVNCRTGMPCHL 406
VR QL ++ ++ + LV+ ++ ++K I + YF AARL G+ Y ++ ++
Sbjct: 933 VRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYI 992
Query: 405 HPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFF---SVKETGKS- 238
HP+S++ P ++Y EL +T +EY +T + WL E+ P +F +++E K+
Sbjct: 993 HPSSSV--AEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEELQKTQ 1050
Query: 237 NRDKR 223
R KR
Sbjct: 1051 KRHKR 1055
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 74.1 bits (174), Expect = 2e-14
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Frame = -1
Query: 711 KFQVPESDHLTXLXLYNQWKSNNYSS--QWCTEHFVHAKAMRKVREVRQQLKDIXQQQRL 538
KF E D LT L Q+ +++ S QWC+++F++ +A++ + ++R+QL++ +
Sbjct: 564 KFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQLREHCLKDGW 623
Query: 537 PLVSC-GTDWXTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDY 361
L S + + S Y A L G Y +HP+S+LFG +
Sbjct: 624 ELNSSPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGK--KVEA 681
Query: 360 VVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKET 247
++YHEL T + Y+ V+++ + WL + P + + + T
Sbjct: 682 IMYHELVFTTKSYVRGVSSIRSNWLNAVAPHYLARRST 719
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = -1
Query: 708 FQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVHAKAMRKVREVRQQLKDIXQQQRLPLV 529
F E D +T L ++ + N QWC +++++ + +R+ ++R L + +P
Sbjct: 499 FFANEGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIPTA 558
Query: 528 SC--GTDWXTVRKCICSAYFQQAARLKGIGEY 439
+D + KC+ + + A L+ G Y
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSY 590
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 633 QWCTEHFVHAKAMRKVREVRQQLKDIXQ 550
QWC E +H ++++R+ R +L + Q
Sbjct: 1107 QWCEEMHLHYTTLQQIRQNRNELSEAAQ 1134
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 477 FQQAARLKGIGEYVNCRTGMPCHLHPTSA 391
FQ R+KG Y + P H HPT+A
Sbjct: 35 FQIQLRIKGYAVYHHGFLSSPSHKHPTTA 63
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 408 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 310
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 717 KEKFQVPESDHLTXLXLYNQWKSNNYSSQWCTEHFVH 607
K +++PE D L L QW N +S ++F+H
Sbjct: 66 KAYYEIPEDDELDELASIPQWFKKNVTSN-IFKNFLH 101
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 492 ICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSP 367
IC + FQ A +GI E +NC + H + + +G SP
Sbjct: 1120 ICLSIFQ-CADYRGINEILNCWESIIKTTHENAIISPVGSSP 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,481
Number of Sequences: 5004
Number of extensions: 41687
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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