Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_E21
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 159 2e-39
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 157 1e-38
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 29 3.2
06_03_0543 + 21967787-21970261 29 5.5
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 28 9.7
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 28 9.7
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 28 9.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 159 bits (387), Expect = 2e-39
Identities = 70/124 (56%), Positives = 92/124 (74%)
Frame = -3
Query: 687 YAYCGTFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
+A G TPG F NQ+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 507 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Query: 327 AKEQ 316
A Q
Sbjct: 221 APAQ 224
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 767 NPR*WFVI*SRPFGQRXVXKFAAHTGVTXIAXR 669
NP+ V +RP+GQR V KFA +TG IA R
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR 106
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 157 bits (380), Expect = 1e-38
Identities = 68/120 (56%), Positives = 89/120 (74%)
Frame = -3
Query: 687 YAYCGTFTPGAFXNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
+A G TPG F NQ+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 507 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 767 NPR*WFVI*SRPFGQRXVXKFAAHTGVTXIAXR 669
NP+ V +RP+GQR V KFA +TG IA R
Sbjct: 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR 106
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 473 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRXSRNAAWIWLX 652
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 653 KAPGVN 670
K +N
Sbjct: 64 KRSRIN 69
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 400 VTGKHTAKPQHFTCQQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 540
V + TAK + PP Q RVG GV H WG C +S
Sbjct: 3 VDQRTTAKAIMPPVEMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 503 TLLSHATPSLPTLLV*CGGCWHVKC*GFAVCF--PVT 399
++++ +PS+ + CG C+ VKC G + C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 503 TLLSHATPSLPTLLV*CGGCWHVKC*GFAVCF--PVT 399
++++ +PS+ + CG C+ VKC G + C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 687 YAYCGTFTPGAFXNQIQAAFREXRLLIVLDPAQDHQ--PITEASYVNIPVIALCNTDSPL 514
YA+ T+ N+I+ +E R LIV+D + E + + + T S
Sbjct: 249 YAWTETWCAQEIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIENDRGSRIITTS-- 306
Query: 513 RFVDIAIPCNTKSSHSI 463
R +D A PC+++ H++
Sbjct: 307 RVLDAATPCSSEVDHTV 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,219
Number of Sequences: 37544
Number of extensions: 384897
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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