Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E19
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   139   2e-33
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   139   2e-33
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    29   3.2  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     28   9.7  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   9.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/114 (55%), Positives = 78/114 (68%)
 Frame = -1

Query: 697 TPVYAYCGTFHTRCFINQIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSP 518
           T  +A  G      F NQ+Q +F EPR LI+ DP  DHQPI E++  NIP IA C+TDSP
Sbjct: 98  TGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157

Query: 517 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRRRGVLPRDQRWDVVVDLFFYRDP 356
           +R+VDI IP N K   SIG ++WLLAR VL+ RG +    +WDV+VDLFFYRDP
Sbjct: 158 MRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/114 (55%), Positives = 79/114 (69%)
 Frame = -1

Query: 697 TPVYAYCGTFHTRCFINQIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSP 518
           T  +A  G      F NQ+Q +F EPR LI+ DP  DHQPI E++  NIP IA C+TDSP
Sbjct: 98  TGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157

Query: 517 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRRRGVLPRDQRWDVVVDLFFYRDP 356
           +R+VDI IP N K  +SIG ++WLLAR VL+ RG +    +WDV+VDLFFYRDP
Sbjct: 158 MRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = -1

Query: 688 YAYCGTFHTRCFINQIQAAFREPRXLIVLDPAQDHQ--PITEASYVNIPVIALCNTDSPL 515
           YA+  T+  +  IN+I+   +E R LIV+D   +       E + +     +   T S  
Sbjct: 249 YAWTETWCAQEIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIENDRGSRIITTS-- 306

Query: 514 RFVDIAIPCNTKSSHSI 464
           R +D A PC+++  H++
Sbjct: 307 RVLDAATPCSSEVDHTV 323


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRGMVCPGTR*VEHN 128
           T C  C    P     VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 208 TRCSSCFWSTPCSRGMVCPGTR*VEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,524
Number of Sequences: 37544
Number of extensions: 382745
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)