Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E17
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    31   0.26 
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.2  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.6  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   9.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.8  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.8  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = -1

Query: 272 ERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 93
           E N  F   V    + +G  +    G  L+++  + + +         +PRE    ++  
Sbjct: 15  EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71

Query: 92  FTSRVSHSKRETRRRSPFGSRRSMQKKKKK 3
           F    +HS R  +   PF SR+S ++K KK
Sbjct: 72  FPLNDTHSSRARQHERPFRSRKSRRRKGKK 101


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 673 YICQRITQVS*GQL--SEDRNXAWSKRAKAGLIQMFSTHRDCESTAY 539
           Y+C  +  +S G L  SED +  W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 695 RRGVDWAVHLSKNNAGVXRPAQRGQKXRVEQKGKS 591
           ++  D A+++S++N      A+RG K R   KGKS
Sbjct: 21  KQHTDTALNISQDNKTSSSSAKRGAKGRRGTKGKS 55


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 788 IGXHVFVQAXGGNWRNVXPVXIPXDPVRDTARRGVDW 678
           +G H F+ A G +WR V P      P      R +DW
Sbjct: 135 LGNHEFMNAKG-DWRYVHPGDKASYPEPSEENRIIDW 170


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 296 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 147
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 224 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 99
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,554
Number of Sequences: 5004
Number of extensions: 59753
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)