Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E16
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.7  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = -3

Query: 685 PXTSHPXNPXXHTXRXTRPPXQXRXPPXGXXLXPLXXPPXXXAPGXPXPPRXLXHH 518
           P    P  P  H      PP      P G  + P   PP    PG   PP    HH
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPPMHHEP-GEHMPP---PPMHHEPGEHMPPPPFKHH 345


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
 Frame = -2

Query: 665 KSXXTYXPXDTPXXTXPRAAXXPPXX--------PPXPXSFXLXPGXTXPAPXLXPPP 516
           KS  +  P   P    P++   PP          PP P S    P    P P   PPP
Sbjct: 117 KSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 617 PRAAXXPPXXPPXPXSFX--LXPGXTXPAPXLXPPPXSG 507
           P +   PP  P  P S      P  + PAP   PPP +G
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNG 262


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 333 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
 Frame = -2

Query: 698  APARPXNVXPXKSXXTYXPX---DTPXXTXPRAAXXPPXXPPXPXSFXLXPGXTXPAPXL 528
            APA P +  P +      P     TP    P +   PP  PP P      P    PA   
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPP-PMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 527  XPPPXSG 507
               P  G
Sbjct: 1741 PSVPNPG 1747


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 330 PPPLRSLISNLSNTCDLTPLPEW 262
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/72 (29%), Positives = 22/72 (30%)
 Frame = -2

Query: 731 PXXPXAXXKXXAPARPXNVXPXKSXXTYXPXDTPXXTXPRAAXXPPXXPPXPXSFXLXPG 552
           P  P       APA P  V P  +     P   P       A  PP  PP P        
Sbjct: 734 PPPPAVIVPTPAPA-PIPVPPP-APIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 551 XTXPAPXLXPPP 516
              PAP   P P
Sbjct: 792 YYAPAPQAEPEP 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,214
Number of Sequences: 5004
Number of extensions: 17010
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)