Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E15
         (791 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113562-1|AAI13563.1|  416|Homo sapiens hepatocyte cell adhesio...    36   0.22 
BC104831-1|AAI04832.1|  416|Homo sapiens hepatocyte cell adhesio...    36   0.22 
AY047587-1|AAQ93018.1|  416|Homo sapiens hypothetical protein pr...    36   0.22 
AL834419-1|CAD39081.1|  165|Homo sapiens hypothetical protein pr...    36   0.22 
AK098396-1|BAC05297.1|  416|Homo sapiens protein ( Homo sapiens ...    36   0.22 
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.              33   0.89 
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.               33   0.89 
BC013284-1|AAH13284.1|  276|Homo sapiens LOC642031 protein protein.    33   1.2  
AL162741-4|CAI23246.1|  255|Homo sapiens tumor necrosis factor r...    33   1.6  
AF241229-1|AAF63506.1|  255|Homo sapiens GITR-D protein.               33   1.6  
BC028012-1|AAH28012.1|  670|Homo sapiens PML-RARA regulated adap...    32   2.1  
AJ272324-1|CAC17767.1|  718|Homo sapiens adaptor molecule-1 prot...    32   2.1  
AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.                31   4.8  
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila...    27   7.1  
X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific proteo...    27   7.9  
AK091375-1|BAC03649.1|  201|Homo sapiens protein ( Homo sapiens ...    30   8.3  

>BC113562-1|AAI13563.1|  416|Homo sapiens hepatocyte cell adhesion
           molecule protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>BC104831-1|AAI04832.1|  416|Homo sapiens hepatocyte cell adhesion
           molecule protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AY047587-1|AAQ93018.1|  416|Homo sapiens hypothetical protein
           protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AL834419-1|CAD39081.1|  165|Homo sapiens hypothetical protein
           protein.
          Length = 165

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 78  PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 110


>AK098396-1|BAC05297.1|  416|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25530 fis, clone CBR07652. ).
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
          Length = 1336

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLP 326
           P  Q G GP G+ G P  P G P GLP
Sbjct: 641 PLHQGGGGPQGFMG-PQGPQGPPQGLP 666


>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
          Length = 1336

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLP 326
           P  Q G GP G+ G P  P G P GLP
Sbjct: 641 PLHQGGGGPQGFMG-PQGPQGPPQGLP 666


>BC013284-1|AAH13284.1|  276|Homo sapiens LOC642031 protein protein.
          Length = 276

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +2

Query: 215 GLPRSTQQPDVAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRWCRWCPGIPRWTRTS 394
           G PR  +QP +       QP  P R + G E     +R  +GP + C+  P +P   R S
Sbjct: 152 GRPRQQKQPLMGPE----QPCPPKRPLMGPEQPCQPLRPLMGPNKPCKPQPLLPIPDRPS 207

Query: 395 LPGRDAIHRRPV 430
           L G+     RP+
Sbjct: 208 LLGQPGPPCRPL 219


>AL162741-4|CAI23246.1|  255|Homo sapiens tumor necrosis factor
           receptor superfamily, member 18 protein.
          Length = 255

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 224 RSTQQPDVAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRWCRWCPGIPR 379
           R  + P+ A+ P+ +  ++  RR  G ET      +P GPP      PG P+
Sbjct: 140 RRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQ 191


>AF241229-1|AAF63506.1|  255|Homo sapiens GITR-D protein.
          Length = 255

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 224 RSTQQPDVAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRWCRWCPGIPR 379
           R  + P+ A+ P+ +  ++  RR  G ET      +P GPP      PG P+
Sbjct: 140 RRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQ 191


>BC028012-1|AAH28012.1|  670|Homo sapiens PML-RARA regulated adaptor
           molecule 1 protein.
          Length = 670

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 206 EVGGLPRSTQQPDVAAHP-KDAQPTE--PSRRIEGSETSAVSVRQP 334
           E+GGLPR++ +P+  + P K  QP    P R+    E SAV  R P
Sbjct: 325 ELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQPEPSAVLKRHP 370


>AJ272324-1|CAC17767.1|  718|Homo sapiens adaptor molecule-1
           protein.
          Length = 718

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 206 EVGGLPRSTQQPDVAAHP-KDAQPTE--PSRRIEGSETSAVSVRQP 334
           E+GGLPR++ +P+  + P K  QP    P R+    E SAV  R P
Sbjct: 373 ELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQPEPSAVLKRHP 418


>AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.
          Length = 2157

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 308  TSAVSVRQPVGPPRWCRWCPGIPRWTRTSLPGRDAIHRR 424
            T  V + Q   PP   RW P    W RT LP R+   RR
Sbjct: 2103 TQRVDLYQQASPPDALRWIP--KPWERTGLPPREGPSRR 2139


>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
            proteoglycan core protein protein.
          Length = 2316

 Score = 26.6 bits (56), Expect(2) = 7.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 421  TVYRVPTRQ-AGSGPAGYSGTPAAPSGRPD 335
            +V + PT Q AG GP+G      A SG PD
Sbjct: 1829 SVTQAPTAQEAGEGPSGILELSGAHSGAPD 1858



 Score = 22.2 bits (45), Expect(2) = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 352  PSGRPDGLPYRDG 314
            PSG P G PY  G
Sbjct: 1879 PSGEPPGTPYFSG 1891


>X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific
           proteoglycan (600 AA) protein.
          Length = 600

 Score = 26.6 bits (56), Expect(2) = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 421 TVYRVPTRQ-AGSGPAGYSGTPAAPSGRPD 335
           +V + PT Q AG GP+G      A SG PD
Sbjct: 52  SVTQAPTAQEAGEGPSGILELSGAHSGAPD 81



 Score = 22.2 bits (45), Expect(2) = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 352 PSGRPDGLPYRDG 314
           PSG P G PY  G
Sbjct: 102 PSGEPPGTPYFSG 114


>AK091375-1|BAC03649.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34056 fis, clone FCBBF3000233. ).
          Length = 201

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 320 SVRQPVGPPRWCRWCPGIPRWTRTSLPGRDAIHRRPVA 433
           ++R P GP R    CPG+P  T  S PGR    RRP A
Sbjct: 55  ALRGPGGPSRCTLHCPGLPP-TDESQPGRYP-RRRPAA 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,590,988
Number of Sequences: 237096
Number of extensions: 2505595
Number of successful extensions: 9470
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9399
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)