Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E08
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.75 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.2  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 609 SSRLPALTGDQWPVLPPPRAAQEXXXXXXXXXRETTAAARQQALAGPRMLAPPEPK 442
           SS LP  + +    +PPPR   +            TAA+    +  P   APP+P+
Sbjct: 176 SSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPR 231


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 220 EASITSTPVPSAASAPVRHGRGVERGGPAGC 128
           E + +STP+PS++S+ V +   V RG P  C
Sbjct: 51  ETASSSTPIPSSSSSGVLNPSSV-RGKPVAC 80


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 492 RQQALAGPRMLAPPEPKTFSLDEVINRTVQA 400
           R   ++GP  L+PPEPK  S+D  IN    A
Sbjct: 150 RPSHVSGP--LSPPEPKAASVDHSINPAYNA 178


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 568 HRPLITSQRRETGAPXGSSXPGRRCSIIGPLPS 666
           H P   S  R    P  S+ P + CS   PLP+
Sbjct: 113 HSPHSFSNPRYVAVPQKSTSPNQVCSYCEPLPN 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,920
Number of Sequences: 5004
Number of extensions: 42779
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)