Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_E07
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 124 1e-29
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 124 1e-29
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 2.2
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 27 2.9
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.8
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 5.0
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 124 bits (300), Expect = 1e-29
Identities = 76/178 (42%), Positives = 99/178 (55%)
Frame = -1
Query: 641 LGSPRAKGXQRGHFSLAHQRSYPRKTHQGF*GKLPALELGILLGVSFTVARAGQKGYHHR 462
+G R KG + G + + PRKTH+G K+ + V +TVARAG GY HR
Sbjct: 218 IGVTRGKGNE-GTTARWGTKRLPRKTHRGL-RKVACIGAWHPANVQWTVARAGNAGYMHR 275
Query: 461 TEMNKKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGLH 282
T++N K + G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 276 TQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328
Query: 281 GT*KAYHYS*KVSACAYKEGCTRKDQPQKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
+ + S + + K+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 329 PGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 124 bits (300), Expect = 1e-29
Identities = 76/178 (42%), Positives = 99/178 (55%)
Frame = -1
Query: 641 LGSPRAKGXQRGHFSLAHQRSYPRKTHQGF*GKLPALELGILLGVSFTVARAGQKGYHHR 462
+G R KG + G + + PRKTH+G K+ + V +TVARAG GY HR
Sbjct: 218 IGVTRGKGNE-GTTARWGTKRLPRKTHRGL-RKVACIGAWHPANVQWTVARAGNAGYMHR 275
Query: 461 TEMNKKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGLH 282
T++N K + G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 276 TQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328
Query: 281 GT*KAYHYS*KVSACAYKEGCTRKDQPQKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
+ + S + + K+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 329 PGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 442 LSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 347
L W++E KR+ KLL M L + C + +H
Sbjct: 337 LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 336 TSHWCNGFLRQVILS-RCIVFNN---FAILFVDSLVQYDRFL 449
+ H C GF++ L+ R +F + F + V LVQY +FL
Sbjct: 492 SEHLCQGFMQGYTLTGRTAIFPSYEAFMTIVVSMLVQYSKFL 533
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 199 KNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVF 101
KNS+ PR + R+ L L + HS+R F
Sbjct: 613 KNSINPRDKVIWHTRRKELAALKTGAHSQRCDF 645
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 376 SVDALFLITLPSFLWIPW 429
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 469 ITVLK*TRNLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLHQW 341
IT+L N++ KE T KL+K +++L L NPLH +
Sbjct: 848 ITLLDPVENMNI--KEPT--FIKLMKKVNILESRLLSNPLHNF 886
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,989
Number of Sequences: 5004
Number of extensions: 69848
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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