Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E07
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   129   2e-30
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   122   3e-28
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871     30   2.3  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    28   7.0  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   9.2  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  129 bits (312), Expect = 2e-30
 Identities = 75/154 (48%), Positives = 91/154 (59%)
 Frame = -1

Query: 575 PRKTHQGF*GKLPALELGILLGVSFTVARAGQKGYHHRTEMNKKSIVLDQGIHKKDGKVI 396
           PRKTH+G   K+  +       VS+TVARAGQ GYHHRTEMNKK   +      K G+  
Sbjct: 242 PRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE- 294

Query: 395 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGLHGT*KAYHYS*KVSACAYKEGCT 216
            + A TE+D +EK ITPMGGFPHYG V  D++MIKG     K    + + S         
Sbjct: 295 SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 354

Query: 215 RKDQPQKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
            ++   KFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  122 bits (294), Expect = 3e-28
 Identities = 71/146 (48%), Positives = 87/146 (59%)
 Frame = -1

Query: 575 PRKTHQGF*GKLPALELGILLGVSFTVARAGQKGYHHRTEMNKKSIVLDQGIHKKDGKVI 396
           PRKTH+G   K+  +       VS+TVARAGQ GYHHRTEMNKK   +      K G+  
Sbjct: 242 PRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE- 294

Query: 395 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGLHGT*KAYHYS*KVSACAYKEGCT 216
            + A TE+D +EK ITPMGGFPHYG V  D++MIKG     K    + + S         
Sbjct: 295 SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 354

Query: 215 RKDQPQKFIDTSSKFGHGRFQTPADK 138
            ++   KFIDTSSKFGHGRFQT  +K
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
          Length = 148

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 484 PARATVNDTPKRMPSSNAGNFP*XPW 561
           P R+  +  P RM S   GNFP  PW
Sbjct: 118 PTRSPCHRPPLRMASPRGGNFPVGPW 143


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 220  ALEKINLKNSLTPRPSSVMVDSRRRLTRLHSWVHSR 113
            A +K N+K+ L   PSS  +DS   L  LH  V+ R
Sbjct: 1686 ANKKTNVKHHLILNPSSAPIDSEHILGGLHMTVNDR 1721


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 3   FFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 122
           FFFFF   +VY   RH R R  R     R  F ++    C
Sbjct: 103 FFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,221
Number of Sequences: 37544
Number of extensions: 468746
Number of successful extensions: 991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)