Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_E04
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.61 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    25   10.0 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -3

Query: 338 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 828  PTPRPXXXPXTXPPXAPPXPCPPXRXXQP 742
            PTP P       PP APP P  P     P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 831  PPTPRPXXXPXTXPPXAPPXPCP 763
            PP P     P   PP APP P P
Sbjct: 1715 PPPPSAPPMP-AGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 831 PPTPRPXXXPXTXPPXAPPXPCPP 760
           PP P P     + PP +PP P  P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 831 PPTPRPXXXPXTXPPXAPPXPCP 763
           PP P P   P + PP  PP   P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 831 PPTPRPXXXPXTXPPXAPPXPCPP 760
           PP P P   P   PP  PP P PP
Sbjct: 9   PPPPPPP--PGFEPPSQPPPPPPP 30


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 353 VQRCRRAPPPPLRSLISNLSNTCDLTPLPEW 261
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 764 GXGXGGAXGGXVXGXXXGRGVGG 832
           G G GGA GG   G   GRG  G
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRG 51


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = -2

Query: 831  PPTPRP--XXXPXTXPPXAPPXPCP 763
            PP P+P     P   P  APP P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,919
Number of Sequences: 5004
Number of extensions: 16420
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)