Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_E03
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 221 1e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 2e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 1e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 63 5e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 9e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 1e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 6.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 221 bits (539), Expect = 1e-58
Identities = 100/118 (84%), Positives = 106/118 (89%)
Frame = -1
Query: 707 PRGFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 528
P FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEI 317
Query: 527 TALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHRKCF 354
ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP IV+RKCF
Sbjct: 318 QALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = -2
Query: 766 KSYELPDGQVITIGNERFRAPE 701
KSYELPDGQVITIGNERFRAPE
Sbjct: 238 KSYELPDGQVITIGNERFRAPE 259
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (257), Expect = 2e-24
Identities = 48/118 (40%), Positives = 77/118 (65%)
Frame = -1
Query: 707 PRGFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 528
P F P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISEL 322
Query: 527 TALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHRKCF 354
A++ ++KI A PER ++ W+GGSILASL TF+++ I+ +EY ++ +++ R+ F
Sbjct: 323 RAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 763 SYELPDGQVITIGNERFRAPEXFSN 689
+Y+LPD Q IT+G E F APE N
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFN 268
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -1
Query: 662 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 489
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 488 APPERKYSVWIGGSILASLXTFQQMWISKQEYDESG 381
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 32.3 bits (70), Expect = 0.079
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 766 KSYELPDGQVITIGNERFRAPEXFSNXRFWVWKLAASTRP 647
K +E PDG G ERFR E N F + A +T P
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPP 318
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 94.7 bits (225), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 662 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 483
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 482 P---ERKYSVWIGGSILASLXTFQQMWISKQEYDESGP---SIVHRKC 357
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 760 YELPDGQVITIGNERFRAPE 701
+E PDG + G ER++ PE
Sbjct: 264 FEFPDGSRMMFGAERYQIPE 283
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.5 bits (217), Expect = 1e-19
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Frame = -1
Query: 710 CPRGFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 531
CP FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KE
Sbjct: 257 CPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKE 316
Query: 530 ITAL--------APSTM---KIKIIAPPERKYSVWIGGSILASLXT-FQQMWISKQEYDE 387
I L P+ + K+KI P R+++V+IGG++LA + MW+SK E++E
Sbjct: 317 IKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEE 376
Query: 386 SG 381
G
Sbjct: 377 YG 378
Score = 34.3 bits (75), Expect = 0.020
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -2
Query: 766 KSYELPDGQVITIGNERFRAPE 701
++Y LPDG+VI +G+ER+ PE
Sbjct: 238 RNYTLPDGRVIKVGSERYECPE 259
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 62.9 bits (146), Expect = 5e-11
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Frame = -1
Query: 707 PRGFFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 531
P FF P + + E N + +D+RK LY N VLSGG+T++ +R+Q++
Sbjct: 290 PEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRD 349
Query: 530 ITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEY 393
+ + + + +I+ ++ +VW GGS+LA F +K +Y
Sbjct: 350 LKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADY 409
Query: 392 DESGPSIVHR 363
+E G SI R
Sbjct: 410 EEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 9e-11
Identities = 29/116 (25%), Positives = 58/116 (50%)
Frame = -1
Query: 716 IPCPRGFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 537
I P F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R++
Sbjct: 596 IRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIK 655
Query: 536 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIV 369
+E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 656 RELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/116 (29%), Positives = 54/116 (46%)
Frame = -1
Query: 707 PRGFFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 528
P F PS + + GI E S+ +I+ L N V GG +PG R+ E+
Sbjct: 284 PELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSEL 343
Query: 527 TALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHRK 360
+LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 344 RSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 608 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 438
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 437 SLXTFQQMWISKQEYDESGPSIVHRK 360
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 461 WIGGSILASLXTFQQM---WISKQEYDESGPSIVHRK 360
++GGSI+A + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,407
Number of Sequences: 5004
Number of extensions: 49755
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -