Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_E01
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 134 2e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 131 1e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 39 7e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.1
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 134 bits (323), Expect = 2e-32
Identities = 63/100 (63%), Positives = 75/100 (75%)
Frame = -1
Query: 621 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P ++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LL
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180
Query: 441 AREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQTK 322
AREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 48.8 bits (111), Expect = 9e-07
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = -2
Query: 764 PXXXFVILSRPFGKRXLXKFPAHTGVTLIAXRLTPGAFXNQIQAAFRD 621
P V+ +R +G R + KF AHTG T IA R TPG F N I +R+
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 120
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 131 bits (316), Expect = 1e-31
Identities = 62/98 (63%), Positives = 74/98 (75%)
Frame = -1
Query: 621 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P +IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LL
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181
Query: 441 AREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
AREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = -2
Query: 764 PXXXFVILSRPFGKRXLXKFPAHTGVTLIAXRLTPGAFXNQIQAAFRD 621
P VI SRP+G R + KF AHTG T IA R TPG F N I +R+
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 121
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -1
Query: 621 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P +++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 441 AR 436
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 641 IQAAFRDLVX*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 465
++A FR + + +L+K + PLL + F LL + +TP DL+T L P +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780
Query: 464 LV 459
L+
Sbjct: 781 LL 782
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,738
Number of Sequences: 5004
Number of extensions: 53828
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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