Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D24
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255...    29   3.3  
09_06_0125 - 21011757-21012428                                         29   4.4  
03_05_0301 + 22928864-22929787                                         29   4.4  

>09_01_0178 -
           2548611-2548670,2549816-2549918,2549993-2550096,
           2550893-2550988,2551418-2551482,2551558-2551591,
           2552469-2552540,2552567-2552644,2553416-2553477,
           2554267-2554530,2555057-2555246,2555432-2555500,
           2555613-2555669,2555746-2555846,2556029-2556146,
           2556225-2556272,2556362-2556487,2556960-2557118,
           2558119-2558216,2558324-2558416,2559741-2559937,
           2560231-2560354,2561121-2561334,2561773-2561830,
           2561955-2562433
          Length = 1022

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 700 GRGXSSAVPCAIPRQSRSSGTGEP 771
           GR  SS+ PC +P++ RS+  G+P
Sbjct: 26  GRVYSSSAPCPLPKKPRSAEDGKP 49


>09_06_0125 - 21011757-21012428
          Length = 223

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 713 PPPYRAPYLANPXPQELGN 769
           PPP RAP+LA P P  +G+
Sbjct: 173 PPPPRAPFLAPPPPPPVGS 191


>03_05_0301 + 22928864-22929787
          Length = 307

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 176 HPHGHPFHPQETTAPHMLVLYLXKAQD 96
           HPH H  H Q   A HM ++ + + QD
Sbjct: 178 HPHHHHHHQQMVNAQHMALVEVARDQD 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,339
Number of Sequences: 37544
Number of extensions: 260009
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)