Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D21
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    30   2.2  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    30   2.2  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      30   2.2  
Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    28   9.0  

>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 149  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 149  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 149  SFSGWALKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 154 SALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQL 333
           S  L   S+P   +  DE+  L R  +  D   HP + +  +P  + E S TSA S   L
Sbjct: 46  STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105

Query: 334 -VGPPRRCRWCPGIP 375
            V  P       G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 378 AGYSGTPAAPSGRPDELPYRDGR 310
           A  SGTP   +G P E PY  GR
Sbjct: 70  ASKSGTPGTNAGVPGEFPYGPGR 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,891
Number of Sequences: 27780
Number of extensions: 363620
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)