Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D20
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   229   4e-61
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   229   4e-61
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.58 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   3.1  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.2  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    26   7.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  229 bits (560), Expect = 4e-61
 Identities = 121/223 (54%), Positives = 149/223 (66%), Gaps = 1/223 (0%)
 Frame = -2

Query: 779 ATKEGSHYGIQXXGGTMGTK*N-GPENXWRTYPCRFCVAQDEMIDCIGVTKGKRIPKVSL 603
           A K+     IQ  GG++  K     E+  +T   +    Q+EMID IGVT+GK     + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 602 LVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIH 423
             GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G  
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG-- 288

Query: 422 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
             D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL 
Sbjct: 289 -DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLL 343

Query: 242 VHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
            HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 344 THTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  229 bits (560), Expect = 4e-61
 Identities = 121/223 (54%), Positives = 149/223 (66%), Gaps = 1/223 (0%)
 Frame = -2

Query: 779 ATKEGSHYGIQXXGGTMGTK*N-GPENXWRTYPCRFCVAQDEMIDCIGVTKGKRIPKVSL 603
           A K+     IQ  GG++  K     E+  +T   +    Q+EMID IGVT+GK     + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 602 LVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIH 423
             GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G  
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG-- 288

Query: 422 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
             D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL 
Sbjct: 289 -DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLL 343

Query: 242 VHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
            HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 344 THTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 584
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 585 SLCANEK 605
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 494
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 710 PENXWRTYPCRFCVAQDEMIDCIGVTKGKRIPKVSLLVGTQRSYPVRHTKXL 555
           P+N  + Y  +   A    ++  G+ K K+I K  + VG+Q    +R  K L
Sbjct: 143 PQNRRKGYGTKIVDAFLHYVESSGIAKNKQILKYRVKVGSQNKPSIRLFKKL 194


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 592 VPTRSDTFGILLPLVTPMQSI 654
           VP+  D FGI+LP + PM ++
Sbjct: 621 VPSSVDGFGIILPCIIPMGTV 641


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 135 HGYTQEGSYSRRSCGYHNPS 76
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 357 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 485
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 540 AGNFPKXLGVSYGVASLCANEK*HLW 617
           AG  P  LGVS G     A EK  LW
Sbjct: 154 AGFAPSLLGVSQGALQFMAYEKLKLW 179


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 417 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 542
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,380
Number of Sequences: 5004
Number of extensions: 68452
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)