Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_D19
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 222 4e-59
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 222 4e-59
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 30 0.44
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 29 0.77
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.5
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 222 bits (543), Expect = 4e-59
Identities = 117/221 (52%), Positives = 148/221 (66%), Gaps = 1/221 (0%)
Frame = -1
Query: 771 RAHIMEIQLNGGTXEDKSEMGPEKIWRTXSLXILCLPKMK*LTALVSPRXKDTK-VSLFV 595
+AH+MEIQ+NGG+ DK E E +T + + + + + R K + +
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 594 GTQRSYPVRHTKVLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 415
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 414 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 235
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 234 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 222 bits (543), Expect = 4e-59
Identities = 117/221 (52%), Positives = 148/221 (66%), Gaps = 1/221 (0%)
Frame = -1
Query: 771 RAHIMEIQLNGGTXEDKSEMGPEKIWRTXSLXILCLPKMK*LTALVSPRXKDTK-VSLFV 595
+AH+MEIQ+NGG+ DK E E +T + + + + + R K + +
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 594 GTQRSYPVRHTKVLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 415
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 414 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 235
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 234 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 403 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKNLGVSYGVA 582
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 583 SLCANEK 603
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 667 FAQDEMIDCIGVTKXKGYKGVTFRW 593
F + +D G+TK KG+ GV RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 666 NTESTGIXFSKFSLGPFHFCPXWYXR*VGFP*CE 767
N E+ G FSK + GPF C W + V P CE
Sbjct: 380 NKETKGSIFSKENKGPF-TCNPWGAKKVSPPPCE 412
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 370 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 492
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 133 HGYTQEGSYSRRSCGYHNPS 74
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 355 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 483
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 415 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 540
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,873
Number of Sequences: 5004
Number of extensions: 68262
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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