Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D18
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   1.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.3  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   9.7  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   9.7  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 279 LXSGGWIGPGVFYGGQNSVDGV 344
           L  GGW+ P ++Y G++SV  V
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINV 124


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 283 SPEAGSVPVSSMEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTA 414
           S    S+P +S EVKTA  +S  ++    TSS       YTP +
Sbjct: 709 SSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPAS 752


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 63  NASRFCVSSLRRGHAN 110
           +ASRFCV SL+R  AN
Sbjct: 579 SASRFCVESLKRQKAN 594


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 724 VHQVYHMPSTPPIDVNDGKW--PAWHYAQY 641
           V +++ +  T  ID NDGKW     H+++Y
Sbjct: 908 VKRLHRIKDTEFIDFNDGKWIFKVQHFSRY 937


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 135 ASRPTVLEEFRTGTS-LLFCTNLFYSVT*IGLMVIAVSCVKLLSVPRPRLXSGGWIGPGV 311
           A R T++ EFRTG+S +L  T+L       G+ V  VS V    +P  R      IG G 
Sbjct: 295 AQRDTLMHEFRTGSSRILITTDLLAR----GIDVQQVSLVINYDLPANRENYIHRIGRGG 350

Query: 312 FYG 320
            +G
Sbjct: 351 RFG 353


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +3

Query: 747 KYSTH*R-QWKVPIGV 791
           KY+TH   QW+VPIG+
Sbjct: 171 KYTTHPEAQWRVPIGI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,349
Number of Sequences: 5004
Number of extensions: 69938
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)