Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D16
         (1030 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    30   0.61 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   8.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 24/89 (26%), Positives = 25/89 (28%)
 Frame = +1

Query: 217 PPLXXFFFXFXKXAPXXXKKXXNPPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLF 396
           PPL          A    KK   PPP          P G G      PPP    +     
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA- 348

Query: 397 XGXXXKXXPXXXTPPPPPXGXPXTXXXPP 483
                        PPPPP   P T   PP
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = +3

Query: 642 PAPPPXRPXGXXAXXPXPPS--XXXXXPTKXXXXPPXP 749
           P+ PP  P G  A  P PPS       P      PP P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269

Query: 466 TXXXPP 483
               PP
Sbjct: 270 EHMPPP 275



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 282

Query: 466 TXXXPP 483
               PP
Sbjct: 283 EHMPPP 288



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 295

Query: 466 TXXXPP 483
               PP
Sbjct: 296 EHMPPP 301



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308

Query: 466 TXXXPP 483
               PP
Sbjct: 309 EHMPPP 314



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321

Query: 466 TXXXPP 483
               PP
Sbjct: 322 EHMPPP 327



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPX 465
           PP     G   P P      G   PPP +  + G           P    PPPP    P 
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334

Query: 466 TXXXPP 483
               PP
Sbjct: 335 EHMPPP 340



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/65 (26%), Positives = 19/65 (29%)
 Frame = +1

Query: 289 PPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPPPXGXPXT 468
           P     G   P P      G   PPP +  + G           P    PPPP    P  
Sbjct: 198 PAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 257

Query: 469 XXXPP 483
              PP
Sbjct: 258 HMPPP 262



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/54 (27%), Positives = 17/54 (31%)
 Frame = +1

Query: 286 PPPKKXXGXXXPXPGGWGGGGXXXPPPKILTKXGXLFXGXXXKXXPXXXTPPPP 447
           PP     G   P P      G   PPP +  + G           P    PPPP
Sbjct: 288 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 643 PPPPPPAPXXGXRXXPXXPP 702
           PPPPPP P       P  PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 643 PPPPPPAPXXGXRXXPXXPP 702
           PPPPPP    G    P  PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +1

Query: 211 PPPPLXXFFFXFXKXAPXXXKKXXNPPPKKXXGXXXPXPGGWGGGGXXXPPP 366
           PPPP           AP        PPP    G   P P   G  G   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV-----PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 386 PXXVKILGGGXXXPPPPXPPGXGKXXP 306
           P    I+GG    PPPP   G G   P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 646 PPPPPAPXXGXRXXPXXPP 702
           P PPPAP  G    P  PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 652 GGAGXPXPXXXXXXXXAXPPPPPPXXV 572
           GG   P P          PPPPPP  V
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 631 GXXXPPPPPPAPXXGXRXXPXXPP 702
           G   PPPPPP         P  PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 631 GXXXPPPPPPAPXXGXRXXPXXPPS 705
           G   PPPPP     G    P  PP+
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 433  TPPPPPXGXPXTXXXPPSXGG 495
            TPPPPP   P     PP   G
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAG 1726


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 643 PPPPPPAPXXGXRXXPXXPP 702
           PPPPPP P       P  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 652 GGAGXPXPXXXXXXXXAXPPPPPPXXVFXKKKK 554
           G    P P          PPPPPP  V  +K K
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 631 GXXXPPPPPPAPXXGXRXXPXXPP 702
           G   PPPPPP      +  P  PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 604 AXPPPPPP 581
           A PPPPPP
Sbjct: 943 AFPPPPPP 950



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 598 PPPPPPXXV 572
           PPPPPP  V
Sbjct: 947 PPPPPPPLV 955


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 648 PPPXRPXGXXAXXPXPPSXXXXXPTKXXXXPPXP 749
           PPP +P       P  PS     P      PP P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.149    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,566
Number of Sequences: 5004
Number of extensions: 36633
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)