Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D15
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z46266-2|CAA86410.1|   99|Caenorhabditis elegans Hypothetical
           protein C07B5.3 protein.
          Length = 99

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 314 SLISNLCNTCDLTPLPEWSCEQSAWWG 234
           SL+ N+CN  + T +P   C+++ W+G
Sbjct: 29  SLMPNVCNAGEETAMPCVCCKKACWFG 55


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = +1

Query: 262 HSGSGVRSQVLQRLEMRLRSGGGGARRFPXXDTRAPPXPHHAXXPXRRXAPAXAXXXGAX 441
           H  + +R + +  +  R +SG    RR P   +++PP       P +  +PA        
Sbjct: 280 HEEAELRQKAIASVAARAKSGSPRRRRSPSA-SKSPPPARRRRSPSQSKSPAPKRAKSRS 338

Query: 442 GXAXAXARXXXEPLA 486
               A AR    P A
Sbjct: 339 KSPPAPARRRRSPSA 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,417
Number of Sequences: 27780
Number of extensions: 90063
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)