Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_D10
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 2.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 27 3.0
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 5.2
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 6.9
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 25 9.1
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 9.1
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.1
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/115 (21%), Positives = 49/115 (42%)
Frame = -3
Query: 401 AGGAKLPSAGLSLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 222
A A+ +A + A +AEA E+ K+++ EP+++ +K+ + R
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148
Query: 221 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 57
R+ + F+ + R G ++C S V D S+ + LG ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.0
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Frame = -3
Query: 467 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAG-LSLNASKAEASLAESGKDMLTVEPRES 291
S+T+ R H L ++ L S G +++++S E GK+ V P +
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSSSTVE----RKGKEASEVNPNST 325
Query: 290 GGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*S 114
DF + +S S+ ++S G R R R +G NS C +
Sbjct: 326 SSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMP 378
Query: 113 VDDFRSWRGVVLGR 72
V + R RG GR
Sbjct: 379 VSNARKPRGRGRGR 392
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 473 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLSLNA--SKAEASLAESG 324
CD+ + S G L H + R GG + + ++ N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 64 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 243
D +PS P +SS+ S RH + +L S + D LRD + + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 9.1
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -3
Query: 398 GGAKLPSAGLSLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS- 222
G A LPS GLS +S +S +G + S + + S S RR S
Sbjct: 190 GAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSS 249
Query: 221 --PFGSRRSMLSVFF 183
P G+R S + F
Sbjct: 250 IAPIGTRPSRKEIAF 264
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 449 ERNRSFGHLVHALGRAAGGAKLPSAGLSLNASKAEAS 339
E +SF L + + A G +K+P A + L S+ E S
Sbjct: 153 ESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = -3
Query: 449 ERNRSFGHLVHALGRAAGGAKLPSAGLSLNASKAEASLAESGKDMLTVEPRESGGSKQCD 270
E N F V + +G + G +L+++ + + + +PRE ++
Sbjct: 15 EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71
Query: 269 FTSRVSHSKRETRRRSPFGSRRS 201
F +HS R + PF SR+S
Sbjct: 72 FPLNDTHSSRARQHERPFRSRKS 94
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 113 VDDFRSWRGVVLGRAASCCDLLRLS 39
VD FR W + SC DLL+LS
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,953
Number of Sequences: 5004
Number of extensions: 66623
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -