Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_D07
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 169 3e-42
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 166 2e-41
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 29 5.7
06_03_0543 + 21967787-21970261 29 5.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 169 bits (410), Expect = 3e-42
Identities = 75/126 (59%), Positives = 96/126 (76%)
Frame = -3
Query: 693 GATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 514
GA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+
Sbjct: 99 GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158
Query: 513 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 334
R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E
Sbjct: 159 RYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218
Query: 333 QQAKEQ 316
++A Q
Sbjct: 219 EEAPAQ 224
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -2
Query: 799 LXVRAVVXIETPADVXVISSRPFGQRAVXKFAAHTRCYAYCGTFHT 662
L R +V IE P D+ V S+RP+GQRAV KFA +T +A G HT
Sbjct: 64 LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 166 bits (403), Expect = 2e-41
Identities = 73/122 (59%), Positives = 93/122 (76%)
Frame = -3
Query: 693 GATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 514
GA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+
Sbjct: 99 GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158
Query: 513 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 334
R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E
Sbjct: 159 RYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218
Query: 333 QQ 328
++
Sbjct: 219 EE 220
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -2
Query: 799 LXVRAVVXIETPADVXVISSRPFGQRAVXKFAAHTRCYAYCGTFHT 662
L R +V IE P D+ V S+RP+GQRAV KFA +T +A G HT
Sbjct: 64 LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +2
Query: 461 PIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAW 640
P+ + +L+L G+++ L+ ++I A +M + S + N+AW
Sbjct: 607 PVNYRELMLQGLSILMKLAAHEDCQRSINKTEGLLAKIM---APLRSGLLNHNDDPNSAW 663
Query: 641 IWLVKAPGVKRXAIXVAPGVRGK 709
V A V + APG GK
Sbjct: 664 FRTVHASMVVILRLVDAPGQTGK 686
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 358 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 474
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,739,796
Number of Sequences: 37544
Number of extensions: 421582
Number of successful extensions: 1138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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