Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D04
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    28   6.3  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
 Frame = +2

Query: 11  FSFSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELY---------PDL 163
           FS  D SP + +S+N + HD  +  T P    K+      P  R E+Y         P+L
Sbjct: 301 FSTVDYSPRSVVSMNGASHD--ILKTVPPLRTKTPPPPPPPVRRHEIYEQHKRYTSAPNL 358

Query: 164 RSRDARVK-KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEP 292
           +S   R++  K  SI  R+    R ++     +T++VKS   +P
Sbjct: 359 QSAVIRIQDDKPRSIMKRNDLVRREQMLYPTVDTQVVKSVVKKP 402


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 438 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 259
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 258 SH--SKRETRRRSP 223
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,944
Number of Sequences: 27780
Number of extensions: 368436
Number of successful extensions: 1115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)