Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_D03
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 164 2e-41
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 106 4e-24
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 73 5e-14
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 70 3e-13
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 59 9e-10
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 32 0.11
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 5.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 5.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 5.6
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 5.6
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 7.4
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 164 bits (398), Expect = 2e-41
Identities = 70/127 (55%), Positives = 97/127 (76%)
Frame = -3
Query: 632 WCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSCGTDWDTVRKCICSAYFQQAARLKG 453
WC++HF+H+K +++ R++R Q++ L S +DWD VR+ +CSAYF QAA KG
Sbjct: 987 WCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESV-SDWDIVRRVLCSAYFHQAACAKG 1045
Query: 452 IGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGP 273
IGEYV+ R+GMPCHLH TS+L+GLG PDYV+YHEL +T++EYM+ VT+VD WLAE G
Sbjct: 1046 IGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGG 1105
Query: 272 MFFSVKE 252
+++SVKE
Sbjct: 1106 VYYSVKE 1112
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -1
Query: 775 PSXFYXPXGREEEXXPSQREISKVPESDHLTLPTLVQ 665
PS FY P R EE + RE VPESDHL L + Q
Sbjct: 941 PSVFYRPKERAEESDAA-REKFNVPESDHLMLLNIYQ 976
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 106 bits (254), Expect = 4e-24
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Frame = -3
Query: 632 WCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSCGTDWDTVRKCICSAYFQQAARLKG 453
WC EH++ A+ MR+ +VR R P+VSCG + + + +CS YF A+
Sbjct: 1007 WCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDS 1066
Query: 452 I-GEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELG 276
G Y P ++HP+ LFG ++V+YHEL T++EYMH V+ V+ +WL E+
Sbjct: 1067 HEGCYKTIVENAPVYMHPSGVLFGKAA--EWVIYHELIQTSKEYMHTVSTVNPKWLVEVA 1124
Query: 275 PMFFSVKETGKSNRDKR 225
P FF + ++ K+
Sbjct: 1125 PTFFKFANANQVSKTKK 1141
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 72.9 bits (171), Expect = 5e-14
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Frame = -3
Query: 632 WCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSCGTD-WDTVRKCICSAYFQQAARLK 456
W E+F+ K++ + R+VR + LV+ ++ D ++K I + YF AARL
Sbjct: 916 WARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLD 975
Query: 455 GIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAEL 279
G+ Y ++ ++HP+S++ P ++Y EL +T +EY +T + WL E+
Sbjct: 976 RSGDSYRTVKSNQTVYIHPSSSVAEK--KPKVIIYFELVLTTKEYCRQITEIQPEWLLEI 1033
Query: 278 GPMFF---SVKETGKS-NRDKR 225
P +F +++E K+ R KR
Sbjct: 1034 SPHYFKPENIEELQKTQKRHKR 1055
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Frame = -3
Query: 632 WCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSCGTD----WDTVRKCICSAYFQQAA 465
WC HF+ +A+ VR Q + L+S D + +R+ + S +F Q A
Sbjct: 580 WCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVA 639
Query: 464 RLKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWL 288
+ G+ YV + LHP+ GL +P++VVY+E +T + ++ VTA+ WL
Sbjct: 640 KKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWL 696
Query: 287 AELGPMFFSVKE 252
EL P ++ + +
Sbjct: 697 IELAPNYYDLDD 708
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 58.8 bits (136), Expect = 9e-10
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = -3
Query: 635 QWCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSCG-TDWDTVRKCICSAYFQQAARL 459
QWC+++F++ +A++ + ++R L S + + + S Y A L
Sbjct: 592 QWCSQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYITNTALL 651
Query: 458 KGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAEL 279
G Y +HP+S+LFG + ++YHEL T + Y+ V+++ + WL +
Sbjct: 652 HPDGSYRTIIGNQTISIHPSSSLFGK--KVEAIMYHELVFTTKSYVRGVSSIRSNWLNAV 709
Query: 278 GPMFFSVKET 249
P + + + T
Sbjct: 710 APHYLARRST 719
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 635 QWCTEHFVHAKAMRKVREVRXXXXXXXXXQRLPLVSC--GTDWDTVRKCICSAYFQQAAR 462
QWC +++++ + +R+ ++R +P +D + KC+ + + A
Sbjct: 524 QWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNVAH 583
Query: 461 LKGIGEY 441
L+ G Y
Sbjct: 584 LQNDGSY 590
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 479 FQQAARLKGIGEYVNCRTGMPCHLHPTSA 393
FQ R+KG Y + P H HPT+A
Sbjct: 35 FQIQLRIKGYAVYHHGFLSSPSHKHPTTA 63
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 668 YKCRKGQVIGFGDLGNFS 721
Y+C KG+ +GFG + NF+
Sbjct: 1120 YQCGKGRDLGFGSILNFT 1137
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 668 YKCRKGQVIGFGDLGNFS 721
Y+C KG+ +GFG + NF+
Sbjct: 1278 YQCGKGRDLGFGSILNFT 1295
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 410 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 312
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 494 ICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSP 369
IC + FQ A +GI E +NC + H + + +G SP
Sbjct: 1120 ICLSIFQ-CADYRGINEILNCWESIIKTTHENAIISPVGSSP 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,014
Number of Sequences: 5004
Number of extensions: 43214
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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