Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_D01
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      46   5e-06
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    32   0.083
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
 Frame = -1

Query: 754 WNTAVVIRTPGNVIGKHXKNHIXESRRF*RNPNXYMEGNTXHPVFATRYGKIAVNXXFGR 575
           +N+ + I   GN+ G + K H+ ++ R       + +  +  P+F T +GK+ V   +  
Sbjct: 100 YNSCIYITENGNLGGVYRKVHLFDTER------KHFKKGSDFPIFETSFGKLGVMICWDT 153

Query: 574 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINRVGYE 401
                  +   NGA+++      +A    + Y   W++  +  A  NC    A NRVG +
Sbjct: 154 AFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTD 208

Query: 400 EFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRD 221
           E  +                F+G S   GP G     L   ++G++   VDL+  + +R 
Sbjct: 209 EKLS----------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRK 252

Query: 220 RRCYYMTQRL-DMYVNSLS 167
               +   R+ D+Y   LS
Sbjct: 253 NYYTFFEDRMPDLYKRLLS 271


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
 Frame = -1

Query: 763 GHTWNTAVVIRTPGNVIGKHXKNHIXE----SRRF*RNPNXYMEGNTXHPVFATRYGKIA 596
           G  +NTA+V    G +I  H K H+ +         R  +    G+    V  T YGK  
Sbjct: 133 GKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMV-DTEYGKFG 191

Query: 595 VNXXFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTA 425
           +   +        M+  +NG  ++  P A     G     W + AR  A+ N  F A
Sbjct: 192 LGICYDIRFPELAMIAARNGCSVMIYPGAFNLSTG--PLHWELLARARAVDNEMFVA 246


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 441 FVIAAFLASTFHMYSLPPSPAIVAD 515
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 573  CRPXXMFTAILPYLVANTGWXVLPS 647
            C+P  +FTA+ P+L A T + ++PS
Sbjct: 1528 CKP--VFTAVPPFLFAGTDFALIPS 1550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,756
Number of Sequences: 5004
Number of extensions: 57456
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)