Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_D01
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 258 3e-69
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 48 1e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 36 0.028
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 1.9
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 28 7.5
11_04_0354 + 16697571-16700256,16700335-16700759 28 9.9
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 9.9
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 28 9.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 258 bits (633), Expect = 3e-69
Identities = 128/208 (61%), Positives = 146/208 (70%)
Frame = -1
Query: 754 WNTAVVIRTPGNVIGKHXKNHIXESRRF*RNPNXYMEGNTXHPVFATRYGKIAVNXXFGR 575
WNTAVVI GN+IG H KNHI F YMEGNT HPVF T YGKI VN +GR
Sbjct: 205 WNTAVVIGNHGNIIGIHRKNHIPRVGDF-NESTYYMEGNTGHPVFETAYGKIGVNICYGR 263
Query: 574 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEF 395
HH LNW+ FG NGAEIVFNPSAT+ GE SE MW +EARNAAI N YF +INRVG E F
Sbjct: 264 HHPLNWLAFGLNGAEIVFNPSATV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVF 321
Query: 394 PNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRR 215
PN FTS DGKP H D G FYGSS+F PD P LSR RDGL+I+ +DLNL RQI+D+
Sbjct: 322 PNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKW 381
Query: 214 CYYMTQRLDMYVNSLSKVLELDYKPQVV 131
+ MT R D Y + LS+ L+ D+KPQV+
Sbjct: 382 GFRMTARYDTYASLLSEYLKPDFKPQVI 409
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 795 SXXLERDEKHSDILGTLRLSLGHPET*SGSXARTTXPRVGDFN 667
S LERD H +I+ + +G+ G + PRVGDFN
Sbjct: 191 SPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFN 233
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 47.6 bits (108), Expect = 1e-05
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 6/211 (2%)
Frame = -1
Query: 796 VLXIRKGREAFGHTWNTAVVIRTPGNVIGKHXKNHIXESRRF*RNPNXYMEGNTXHPVFA 617
V+ + EA +N+ +I G +G + K+HI + + + + G+T F
Sbjct: 91 VIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGY-QEKFYFNPGDTGFKAFK 149
Query: 616 TRYGKIAVNXXFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWNVEARNA 452
T+Y I V + + GAEI+F P+A I E S W +
Sbjct: 150 TKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGH 208
Query: 451 AITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTR 275
A N A NR+G E E H + + F+G+S+ GP G +
Sbjct: 209 AGANLVPLVASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVKLANDKD 259
Query: 274 DGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 182
+ +L+A DL+ + R + +R D+Y
Sbjct: 260 EDVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 36.3 bits (80), Expect = 0.028
Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 4/198 (2%)
Frame = -1
Query: 763 GHTWNTAVVIRTPGNVIGKHXKNHIXE----SRRF*RNPNXYMEGNTXHPVFATRYGKIA 596
G +NT VI G + KH K H+ E R + + G + T G+I
Sbjct: 71 GRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEP-TIVDTDVGRIG 129
Query: 595 VNXXFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAIN 416
+ M++ GA ++ PSA G + +W++ ++ A+ N F +
Sbjct: 130 IGICHDIRFPELAMLYRSRGAHLICYPSAFNMSTG--QLLWDLMQKSRAVDNQLFVVTCS 187
Query: 415 RVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLN 236
PN A D + +G S GP G + + ++ +D ++
Sbjct: 188 PA---RDPN---------AESDY-MIWGHSSLIGPFG-EVIATAGHEEATVVGEIDHSMI 233
Query: 235 RQIRDRRCYYMTQRLDMY 182
+ IRD M +R D+Y
Sbjct: 234 QTIRDNLPLEMQRREDLY 251
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -1
Query: 523 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 344
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 343 LFYG 332
YG
Sbjct: 103 KLYG 106
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 266 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 442
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 197 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 313
LG V+ TSVS+LS Q+Q+ +SG G N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 257 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 144
G+G EP+ D ++ L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +2
Query: 281 AGQTGAPNAVGAAEVA-----RSVEQAQVFVCRFPVSRSELVRELL------VADSVDGR 427
A + PNA+ AAE+ S+ Q ++ + E + E L +A+ R
Sbjct: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKYLSR 184
Query: 428 CEVAVRDSCVPSF--NVPHVLAAAFSGDRR 511
+++ C P + +PH +A AFSG+RR
Sbjct: 185 SHLSI--DCRPDWMTRIPHYIAVAFSGERR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,515,393
Number of Sequences: 37544
Number of extensions: 418839
Number of successful extensions: 1238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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