Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_C23
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 236 3e-63
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 234 1e-62
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.5
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.9
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.8
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 236 bits (577), Expect = 3e-63
Identities = 115/175 (65%), Positives = 129/175 (73%)
Frame = -1
Query: 850 RXDGTQWINXGGXWEKXVXAXRAXXXIENPADVXVXSSRPFGQRAVLKFAAHTGATXIAG 671
R DG IN G WEK V A R IENPADV V SSRP+G RAVLKFAAHTGAT IAG
Sbjct: 45 RSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAG 104
Query: 670 RFTPGAFXNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 491
RFTPG F N I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AI
Sbjct: 105 RFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAI 164
Query: 490 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
P N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 165 PINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 234 bits (572), Expect = 1e-62
Identities = 113/177 (63%), Positives = 129/177 (72%)
Frame = -1
Query: 850 RXDGTQWINXGGXWEKXVXAXRAXXXIENPADVXVXSSRPFGQRAVLKFAAHTGATXIAG 671
R DG +N G WEK V A R IENPADV V S+R +G RAVLKFAAHTGAT IAG
Sbjct: 44 RSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAG 103
Query: 670 RFTPGAFXNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 491
RFTPG F N I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAI
Sbjct: 104 RFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAI 163
Query: 490 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 320
P N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 164 PTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 619 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 440
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 439 AR 434
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 571 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 461
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 36/92 (39%)
Frame = +2
Query: 569 SNGLMVLCRVQYNQETRFTECSLDLVXKSTWCETSRNXRSTGVRXKLQYSTLTEGP**XD 748
S GL L R + E F + + + W T + + G+R ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 749 XHISGVLDGXXSTXSXNXFFPXTTXVDPLGTI 844
H SGV G + +T V P G I
Sbjct: 226 LH-SGVFGGTVHEPMTDLVAIMSTLVKPNGEI 256
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,177
Number of Sequences: 5004
Number of extensions: 60052
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -