Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_C23
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   228   5e-60
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   225   3e-59
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.6  
06_03_0543 + 21967787-21970261                                         29   6.2  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   8.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  228 bits (557), Expect = 5e-60
 Identities = 105/179 (58%), Positives = 130/179 (72%)
 Frame = -1

Query: 850 RXDGTQWINXGGXWEKXVXAXRAXXXIENPADVXVXSSRPFGQRAVLKFAAHTGATXIAG 671
           R DG   IN G  WEK   A R    IENP D+ V S+RP+GQRAVLKFA +TGA  IAG
Sbjct: 46  RSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105

Query: 670 RFTPGAFXNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 491
           R TPG F NQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI I
Sbjct: 106 RHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGI 165

Query: 490 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 314
           P N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  225 bits (550), Expect = 3e-59
 Identities = 103/175 (58%), Positives = 127/175 (72%)
 Frame = -1

Query: 850 RXDGTQWINXGGXWEKXVXAXRAXXXIENPADVXVXSSRPFGQRAVLKFAAHTGATXIAG 671
           R DG   IN G  WEK   A R    IENP D+ V S+RP+GQRAVLKFA +TGA  IAG
Sbjct: 46  RTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105

Query: 670 RFTPGAFXNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 491
           R TPG F NQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI I
Sbjct: 106 RHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGI 165

Query: 490 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
           P N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 457 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 368
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,172
Number of Sequences: 37544
Number of extensions: 438253
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)