Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_C15
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0258 + 27950196-27950749,27953670-27954570 31 1.1
09_04_0164 + 15265878-15268701,15268782-15269200 30 2.5
06_03_0188 - 17691582-17692241 30 2.5
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 30 2.5
09_02_0001 - 2857651-2857923,2858089-2858283 29 3.3
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 3.3
07_02_0021 - 11903135-11903248,11905028-11905441 29 4.3
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 29 5.7
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 29 5.7
02_03_0411 - 18739279-18739902,18741471-18741671 29 5.7
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 28 7.6
01_06_1740 - 39575614-39576981 28 7.6
08_01_0821 + 7966587-7966832 28 10.0
06_03_0416 + 20568087-20568702,20568767-20570313 28 10.0
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -2
Query: 365 CSRAASRDTPSPRSPGSTDRTCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 186
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
Query: 185 RRRLKHSSTPLNP 147
+TP NP
Sbjct: 173 ------CATPANP 179
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 660 WFKNDSPVYEYDVESNELIDSSPTSI 583
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 395 PTWTTSATGWCSRAASRDTPSPRSPGSTDRTCPLK 291
P WTT+ T A+ R+T P P + + + PL+
Sbjct: 35 PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = -2
Query: 461 LLSSRNALSCSR*SLASWSPIAPTWTTSATGWCSRAASRDTPSPRSPGSTDRTCPLKRTR 282
+L +R L+ + LA +SP + SA+ CS AAS S S R C R
Sbjct: 1 MLFARRPLATAASHLAPFSPPLLLFFASASSSCSSAASP------SSASGPRGCSAVRME 54
Query: 281 A*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRL 174
P S+GA W++ +P+T+S + +
Sbjct: 55 T-------GAVEPASTGAIWSTPSVEPRTISVGKEI 83
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 377 ATGWCSRAASRDTPSPRSPGSTDRTCP 297
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +3
Query: 75 YLTGTSILSIHDAFGSSSFFLSSTRV*RGRRMF*PSPSRKRFRLGKCTRPCRSRGGRI*P 254
+L G +L++H + +SSF S V R +F PSP P + P
Sbjct: 53 FLFGEDLLAMHHSAAASSFDRSQPEVQVFRDVFSPSPPLLHVAETSSLLPTAAAAAPAPP 112
Query: 255 ARPSEAPS 278
P+ APS
Sbjct: 113 PPPAPAPS 120
>07_02_0021 - 11903135-11903248,11905028-11905441
Length = 175
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = -3
Query: 394 LRGQHRQQGGAPVPRQGTPQAQDHLVQRTERAH*KEPAHEGASLGRAGHILPPLERHGRV 215
LRG+ R GA + Q + A +V++ RA EPA EGA+ G L + + G
Sbjct: 45 LRGRRR---GAGIRCQRSAAASAVVVEKKSRA--VEPAREGANAGHTESELTVVMKFGGS 99
Query: 214 HLPSRKRFR 188
+ S +R R
Sbjct: 100 SVASAERMR 108
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = -2
Query: 371 GWCSRAASRD-----TPSPRSPGSTDRTCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 207
GW R S+ TPS S ++ +CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 206 KPKTLSARRRLK 171
LS++ + K
Sbjct: 91 SAHLLSSQLKEK 102
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 347 RDTPSPRSPGSTDRTCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKH 168
R T S R +D+ C R +R + +S + T+++A P + SAR R H
Sbjct: 216 RRTHSSRVVPGSDKPCVTSRP------SRFDYIGSSASSISMTASIASPSSSSARPRAPH 269
Query: 167 SSTP 156
S+ P
Sbjct: 270 STAP 273
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 359 RAASRDTPSP--RSPGSTDRTCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 186
R++S +PSP RS S+ R C R R A A+ S SSG T S++ +A
Sbjct: 87 RSSSAYSPSPASRSASSSSRRCSRARGRGGGGGAAAAASTTTSSGYTSVSSVGAVTAAAA 146
Query: 185 RRRLKHSS 162
R SS
Sbjct: 147 AWRSHDSS 154
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 286 VLFNGHVLSVEPGDLGLGVSLDAAREHHPV 375
+ NG+ V+ GDLGL LD AR H +
Sbjct: 175 IFVNGNQGEVKIGDLGLATILDNARSAHSI 204
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 300 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 187
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
>08_01_0821 + 7966587-7966832
Length = 81
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 377 ATGWCSRAASRDTPSPRSPGSTDR 306
A GWC R+T S ++PG+ R
Sbjct: 10 AMGWCGAEEERETASRKAPGACPR 33
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 333 PKITWFNGQNVPIEKNPRMKVLRSGELVI----SSLLWS 229
P+I WF ++ P+ +N ++ G+LV+ +L+WS
Sbjct: 90 PEIVWFANRDHPVGENATVQFTELGDLVLYDADGTLVWS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,326,391
Number of Sequences: 37544
Number of extensions: 419062
Number of successful extensions: 1359
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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