Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_C14
         (1066 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.039
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.052
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 910 PPPPPPPAXXXXVXXPXXPPPXP 978
           PPPPPPP        P  PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +3

Query: 840 GGPPXPSLXXXXXXGGPPXXXXXPPPPSXPRXXGXXXXAXAPXXXP 977
           GGPP P         GPP     PPPP      G    A AP   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP---PPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
 Frame = +1

Query: 913  PPPPPPAXXXXVXXP---XXPPPXPXXXXSXXSPAXXG 1017
            PPPPPPA       P     PPP P        P   G
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.052
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 910  PPPPPPPAXXXXVXXPXXPPPXPXXXXSXXSPAXXG 1017
            PPPPPPP        P  PPP         +PA  G
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 910 PPPPPPPAXXXXVXXPXXPPP 972
           PPPPPPP        P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 913 PPPPPPAXXXXVXXPXXPPPXP 978
           PPPPPP           PPP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
 Frame = +1

Query: 910  PPP---PPPPAXXXXVXXPXXPPPXPXXXXSXXSPAXXGXR 1023
            PPP   PPPP+       P   PP P    S  S    G R
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1

Query: 913  PPPPPPAXXXXVXXPXXPPPXPXXXXSXXSPAXXGXRRSP 1032
            PPPPP A           PP P    +   P   G R  P
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP 947


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 913  PPPPPPAXXXXVXXPXXPPPXPXXXXSXXSPAXXGXRRSP 1032
            PPP PP     V  P   PP P    S  +PA     + P
Sbjct: 253  PPPIPPPSNGTVSSPPNSPPRPIAPVS-MNPAINSTSKPP 291



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
 Frame = +2

Query: 611 PPPXPPSXXS---PXXXPXXXXXSXXXXPPAARXFS*XXXXXXXXXXPXPPPPXPR 769
           PPP PPS  +   P         S    PP  R  +             PPPP PR
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,838
Number of Sequences: 5004
Number of extensions: 18866
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)