Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_C10
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 221 1e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 221 1e-58
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.58
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 3.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.1
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.1
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 221 bits (539), Expect = 1e-58
Identities = 113/209 (54%), Positives = 141/209 (67%), Gaps = 1/209 (0%)
Frame = -2
Query: 734 GTIEDKVKWXREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSLLVGTQRSYPVRHTK 558
G++ DKV+W REH E + + + + R K + + GT+R P + +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 557 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 378
GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST+
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTD 297
Query: 377 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 198
+D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357
Query: 197 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = -1
Query: 771 QKKAHIMESNLPGYH-RGQSEMXQRTFGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 595
QKKAH+ME + G + E + F + + + S F Q+EMID I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 594 WHTKKLPRKTHQG 556
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 221 bits (539), Expect = 1e-58
Identities = 113/209 (54%), Positives = 141/209 (67%), Gaps = 1/209 (0%)
Frame = -2
Query: 734 GTIEDKVKWXREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSLLVGTQRSYPVRHTK 558
G++ DKV+W REH E + + + + R K + + GT+R P + +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 557 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 378
GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST+
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTD 297
Query: 377 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 198
+D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357
Query: 197 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = -1
Query: 771 QKKAHIMESNLPGYH-RGQSEMXQRTFGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 595
QKKAH+ME + G + E + F + + + S F Q+EMID I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 594 WHTKKLPRKTHQG 556
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.58
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 402 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 581
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 582 SLCANEK 602
SL AN +
Sbjct: 433 SLPANSR 439
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -3
Query: 175 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 8
SV+ +SR+R +HS +RR+ ++ L Q+ AA RE +HLT+ +KK
Sbjct: 2 SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 369 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 491
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 728 IEDKVKWXREHLENLSLSILCLP 660
IE + W +E+++ S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 199 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 86
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 132 HGYTQEGSYSRRSCGYHNPS 73
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 354 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 482
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 414 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 539
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,554
Number of Sequences: 5004
Number of extensions: 74893
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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