Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_C09
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 254 5e-68
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 247 7e-66
11_04_0146 - 14091671-14092357,14092996-14093229 30 1.9
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.3
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.7
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 28 7.5
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.5
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 28 7.5
04_01_0592 + 7808821-7809210 28 7.5
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 254 bits (623), Expect = 5e-68
Identities = 124/225 (55%), Positives = 152/225 (67%)
Frame = -3
Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
K+ QKK H+ME + G F+ K + + + + KGY
Sbjct: 170 KMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGY 229
Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+GV +RW +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR
Sbjct: 290 -----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343
Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 122
+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 247 bits (605), Expect = 7e-66
Identities = 120/217 (55%), Positives = 148/217 (68%)
Frame = -3
Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
K+ QKK H+ME + G F+ K + + + + KGY
Sbjct: 170 KMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGY 229
Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
+GV +RW +LPRKTH+ LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR
Sbjct: 290 -----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343
Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 146
+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 625 KGYKGVTSRWHTKKLPRKTHKXLRKVACIGAW 530
K YK T RWH K++ K K KV +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 186 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 43
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 379 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 284
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 171 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 43
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Frame = -1
Query: 729 DKVKWXREHFGETYPCRFCVCPR*ND*LHWXHQGXKDTKVSLL---------VGTQRSYP 577
DKV ++ G YPC + N L+ G +D L + T RS+P
Sbjct: 477 DKVTEIQDMSGSLYPCETSLVGCSNRKLYETKYGQRDAAALCLSTSEIQSRGIDTARSHP 536
Query: 576 VRHTRXLGKLPALELGIL 523
G+LP ++ GIL
Sbjct: 537 AGGILDQGRLPCVQCGIL 554
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -3
Query: 523 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 374
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 373 SEKSITPMGGFPHYGEVNN 317
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 625 KGYKGVTSRWHTKKLPRKTHKXLRKV 548
K YK T RWH K++ K K KV
Sbjct: 29 KIYKDKTKRWHDKRIKHKEFKAREKV 54
>04_01_0592 + 7808821-7809210
Length = 129
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 637 SPRXKGYKGVTSRWHTKKLPRKTHKXLRKV 548
S K YK T RWH K++ K K L KV
Sbjct: 25 SHNAKIYKERTKRWHDKRIKIKKFKPLDKV 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,105,369
Number of Sequences: 37544
Number of extensions: 474236
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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