Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_C09
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   356   2e-98
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   356   2e-98
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   356   2e-98
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   356   2e-98
BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   349   3e-96

>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  356 bits (875), Expect = 2e-98
 Identities = 171/240 (71%), Positives = 188/240 (78%)
 Frame = -3

Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
           +L  + QKK H+ME  L G          R              + + +  +   + KG+
Sbjct: 169 RLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGF 228

Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           KGVTSRWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG
Sbjct: 229 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 288

Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
            GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLR
Sbjct: 289 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 348

Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 77
           KSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 349 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 408


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  356 bits (875), Expect = 2e-98
 Identities = 171/240 (71%), Positives = 188/240 (78%)
 Frame = -3

Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
           +L  + QKK H+ME  L G          R              + + +  +   + KG+
Sbjct: 156 RLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGF 215

Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           KGVTSRWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG
Sbjct: 216 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 275

Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
            GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLR
Sbjct: 276 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 335

Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 77
           KSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 336 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 395


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  356 bits (875), Expect = 2e-98
 Identities = 171/240 (71%), Positives = 188/240 (78%)
 Frame = -3

Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
           +L  + QKK H+ME  L G          R              + + +  +   + KG+
Sbjct: 156 RLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGF 215

Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           KGVTSRWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG
Sbjct: 216 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 275

Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
            GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLR
Sbjct: 276 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 335

Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 77
           KSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 336 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 395


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  356 bits (875), Expect = 2e-98
 Identities = 171/240 (71%), Positives = 188/240 (78%)
 Frame = -3

Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
           +L  + QKK H+ME  L G          R              + + +  +   + KG+
Sbjct: 169 RLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGF 228

Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           KGVTSRWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG
Sbjct: 229 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 288

Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
            GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLR
Sbjct: 289 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 348

Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 77
           KSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 349 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 408


>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  349 bits (858), Expect = 3e-96
 Identities = 167/234 (71%), Positives = 184/234 (78%)
 Frame = -3

Query: 796 KLXNRGQKKVHIMESXLXGYHXGQSEMXQRTFWRNXSLSILCLPKMK*LTALXSPRXKGY 617
           +L  + QKK H+ME  L G          R              + + +  +   + KG+
Sbjct: 180 RLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGF 239

Query: 616 KGVTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 437
           KGVTSRWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG
Sbjct: 240 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG 299

Query: 436 QGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 257
            GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLR
Sbjct: 300 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 359

Query: 256 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREEAA 95
           KSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EEAA
Sbjct: 360 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAA 413


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,327,802
Number of Sequences: 53049
Number of extensions: 785538
Number of successful extensions: 2310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)